View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6729_high_4 (Length: 607)
Name: NF6729_high_4
Description: NF6729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6729_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 39076917 - 39077519
Alignment:
| Q |
1 |
tctactaagtaacatgatgatgttgatagacacaagtgatagagttgatataattatatgtttaatgaaaaaccagaaatgataaagnnnnnnnnnnnng |
100 |
Q |
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| T |
39076917 |
tctactaagtaacatgatgatgttgatagacacaagtgatagagttgatataattatatgtttaatgaaaaaccagaaatgataaagaaaaaaaaaaa-g |
39077015 |
T |
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| Q |
101 |
gttcaatctcaatgaaatgtttatttatatatgggctatatgatctgttcatactttctttatgaattgatttatagatagatacacatcacatggcatg |
200 |
Q |
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| T |
39077016 |
gttcaatctcaatgaaatgtttatttat-----ggctatatgatctgttcatactttctttatgaa-tgattt----gtagatacacatcacatggcatg |
39077105 |
T |
|
| Q |
201 |
gaagtgaaaatgaattatcttcattggtaattgtaaccatgaagatcatagaaacgggacccataacacatctttaattacttgtgtcagc---attgat |
297 |
Q |
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| T |
39077106 |
gaagtgaaaatgaattatcttcattggtaattgtaaccatgaagatcatagaaaggggacccataacacatctttaattacttgtgtcagcaatattgat |
39077205 |
T |
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| Q |
298 |
gaatttgagacattatttagaat-ggattgattgaattttttcactgacatgcaatgcaatgtagggcaaggagagttgataataatacaacaaatatta |
396 |
Q |
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| T |
39077206 |
gaatttgagacattatttagaatgggattgattgaattttttcactgacatgcaatgcaatgtagggcaaggagagttgataataatacaacaaat---- |
39077301 |
T |
|
| Q |
397 |
attaatgttattgaaaatcaattaacaacgaatataaagtgacaatgattgaagtttgtgtctcagacaagatgctgttgttataaatgtcaccaccaaa |
496 |
Q |
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| T |
39077302 |
actaatgttattgaaaatcaattaacaacgaatataaagtgacaatgattgaaatttgtgtctcagacaagatgctgttgttataaatgtcaccaccaaa |
39077401 |
T |
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| Q |
497 |
cactctagttttcatagttattaagtatgctgcaatgcaaaatggaatttttggc-------------atttaagctaatgtagatttgtcattttttgt |
583 |
Q |
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| T |
39077402 |
caatgtagttttcatagttattaagtatgctgcaatgcaaaatggaatttttggcatttatttcctttatttaagctaatgtagatttgtcattttttgt |
39077501 |
T |
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| Q |
584 |
cttttgtctccttaatta |
601 |
Q |
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| T |
39077502 |
cttttgtctccttaatta |
39077519 |
T |
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