View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6729_high_6 (Length: 431)
Name: NF6729_high_6
Description: NF6729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6729_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 22 - 416
Target Start/End: Original strand, 55869208 - 55869600
Alignment:
| Q |
22 |
tatatgatccacaaatagttatttagtatttacaatatatatggagtaagagggggggaaaagaattnnnnnnnttcaactgaatactnnnnnnnngaat |
121 |
Q |
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| T |
55869208 |
tatatgatccacaaatagttatttagtatttacaatatatatggagtaagaggggg--aaaagaattaaaaaaattcaactgaatactaaaaaaaagaat |
55869305 |
T |
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| Q |
122 |
ctaaaacaagaagggggcatcttgccatttcattgctgtgtcaatttcttcttagatgaacttgcacttgaaaatcctctcattttcgtcttcccttcca |
221 |
Q |
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| T |
55869306 |
ctaaaacaagaagggggcatcttgccatttcattgttgtgtcaatttcttcttagatgaacttgcacttgaaaatcctctcattttcgtcttcccttcca |
55869405 |
T |
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| Q |
222 |
tacaaaaaccttttcatcaactcttaaatcacaccctaatgtgacagctctcgatgaagttgtctgaaaagtcaacatacttggtccacaatggttttag |
321 |
Q |
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| T |
55869406 |
tacaaaaaccttttcatcaactcttaaatcacgccctaatgtgacagctctcgatgaagttgtctgaaaagtcaacatacttggtccacaatggttttag |
55869505 |
T |
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| Q |
322 |
ctgcggaaaagctatatctagccatggttttgcccagccattgaaatggactaccccggcattcttagcatcaacaagatttgtattttcctgat |
416 |
Q |
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| T |
55869506 |
ctgcggaaaagctatatctagccatggttttgcccagccattgaaatggactaccccggcattcttagcatcaacaagatttgtattttcctgat |
55869600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 258 - 416
Target Start/End: Complemental strand, 31537066 - 31536908
Alignment:
| Q |
258 |
taatgtgacagctctcgatgaagttgtctgaaaagtcaacatacttggtccacaatggttttagctgcggaaaagctatatctagccatggttttgccca |
357 |
Q |
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| T |
31537066 |
taatgtgacaactcttgatgaagttatctgaaaagtcaacatatttggtccacaatggccttagttttggaaaaataatatctagccatggttttgctca |
31536967 |
T |
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| Q |
358 |
gccattgaaatggactaccccggcattcttagcatcaacaagatttgtattttcctgat |
416 |
Q |
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| T |
31536966 |
gccattgaaattgacaaccccagcattcttagcatcaacaagacttgtattttcttgat |
31536908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 416
Target Start/End: Original strand, 34674011 - 34674152
Alignment:
| Q |
275 |
atgaagttgtctgaaaagtcaacatacttggtccacaatggttttagctgcggaaaagctatatctagccatggttttgcccagccattgaaatggacta |
374 |
Q |
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| T |
34674011 |
atgaacttatctgagaagtcgacatattttgtccacaatgaccttagttctggaaaagctatgtctagccatggctttgccctgccattgaaatggatga |
34674110 |
T |
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| Q |
375 |
ccccggcattcttagcatcaacaagatttgtattttcctgat |
416 |
Q |
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| T |
34674111 |
caccagcattctcaacatcgtcaacatttgtattttcctgat |
34674152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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