View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6729_high_7 (Length: 418)
Name: NF6729_high_7
Description: NF6729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6729_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 25952505 - 25952110
Alignment:
| Q |
1 |
tgacatctctaaaagaataattcgatagcgaagcaaatattaaaaatgattacaagttaagctattcaaattcaatgttaatttcaaaatctacttccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25952505 |
tgacatctctaaaagaataattcgatagcgaagcaaatataaaaaatgattataagtgaagctattcaaattcaatgttaatttcaaaatctacttccac |
25952406 |
T |
|
| Q |
101 |
ttataagatcaacataaataattaatatgtttcactctttctaaagaccttagctataacagatgatttgaaacattgcaagattatttagcttcccctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25952405 |
ttataagatcaacataaataattaatatgtttcactctttctaaagaccctagctataacagatgatttgaaacattgccagattatttagcttcccctt |
25952306 |
T |
|
| Q |
201 |
ctttctgcttcttcaaccgctttaacaacaatgcacaccttttctttcttccaactataggctgcacgccttctcccggttcactcttcttctccgtctc |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
25952305 |
gtttctgcttcttcaaccgcttta---acaatgcacaccttttctttcttccaactataggctgcacgcattttcccggttcactcttcttctccgtctc |
25952209 |
T |
|
| Q |
301 |
caaagagggcaacggagttgtagtctcattagatatgttaaatccaagaccagattgtttagtcctcggtttcgcctcaataggatttaatataccctg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25952208 |
caaagagggcaacggagttgtagtctcattagatatgttaaatccaagaccagattgtttagtcctcggtttcgcctcaataggatttaatataccctg |
25952110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 239 - 399
Target Start/End: Complemental strand, 25945674 - 25945514
Alignment:
| Q |
239 |
cttttctttcttccaactataggctgcacgccttctcccggttcactcttcttctccgtctccaaagagggcaacggagttgtagtctcattagatatgt |
338 |
Q |
| |
|
|||||||||||||| |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25945674 |
cttttctttcttccgactacaggctgaatgccttctcccggttcactcttcttctccgtctccaaagagggcaacggagttgtagtctcattagatatgt |
25945575 |
T |
|
| Q |
339 |
taaatccaagaccagattgtttagtcctcggtttcgcctcaataggatttaatataccctg |
399 |
Q |
| |
|
|||||||||||||||| | |||| |||| |||||||||| |||||||||||||||||||| |
|
|
| T |
25945574 |
taaatccaagaccagaatatttatccctcagtttcgcctcgataggatttaatataccctg |
25945514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 246 - 399
Target Start/End: Complemental strand, 2661529 - 2661379
Alignment:
| Q |
246 |
ttcttccaactataggctgcacgccttctcccggttcactcttcttctccgtctccaaagagggcaacggagttgtagtctcattagatatgttaaatcc |
345 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||||| ||||||||||||||| ||||| |||||||| |||| || | || ||| ||||||||| |
|
|
| T |
2661529 |
ttcttccaactgtaggctgca---caactcccggttcagtcttcttctccgtctgcaaagcaggcaacggcattgtggttcccttcgattcgttaaatcc |
2661433 |
T |
|
| Q |
346 |
aagaccagattgtttagtcctcggtttcgcctcaataggatttaatataccctg |
399 |
Q |
| |
|
||||||||| | ||||| |||| ||||| |||||||||||||| |||||||| |
|
|
| T |
2661432 |
aagaccagaatttttagccctcaacttcgcttcaataggatttaaaataccctg |
2661379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University