View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6729_high_9 (Length: 391)
Name: NF6729_high_9
Description: NF6729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6729_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 8479762 - 8480101
Alignment:
| Q |
19 |
aaatgtgcacagataccatattgggacagcatttccaactgatatctcttgaaatccaagtccaagcaaaccatcaaacttagccgcgacaaatgtaagt |
118 |
Q |
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| T |
8479762 |
aaatgtgcacagataccatattgggacagcatttccaactgatatctcttgaaatccaagtccaagcaaaccatcaaacttagccgcgacaaatgtaagt |
8479861 |
T |
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| Q |
119 |
ccaggctctctagtcgcttcaataaattcctgaagggaataaaa-aatatatactcaagatcgatcaacatattatccgtctgaaggaaacaaaatatgg |
217 |
Q |
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| T |
8479862 |
ccaggctctctagtcgcttcaataaattcctgaagggaataaaaaaatatatactcaagatcaatcaacatattatccgtctgaaggaaacaaaatatgg |
8479961 |
T |
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| Q |
218 |
aatgaaaatcaacattaccacgtccttcacaactacatcgccaacttttacattgtcgtagctaaagaagccagaaactgctccagtaccatactgaatt |
317 |
Q |
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| T |
8479962 |
aatgaaaatcaacattaccacgtccttcacaactacatcgccaacttttacattgtcgtagctaaagaagccagaaactgctccagtaccatactgaatt |
8480061 |
T |
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| Q |
318 |
gcagcatgagtccctaaataacaagacaaactctcgtgtg |
357 |
Q |
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| T |
8480062 |
gcagcatgagtccctaaataacaagacaaactctcgtgtg |
8480101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 55355907 - 55356025
Alignment:
| Q |
31 |
ataccatattgggacagcatttccaactgatatctcttgaaatccaagtccaagcaaaccatcaaacttagccgcgacaaatgtaagtccaggctctcta |
130 |
Q |
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| T |
55355907 |
ataccacactggaacagcatttccaactgatatctcttgaaatccaagtcccaatataccatcaaacttggccaccaaaaaggtaacaccaggctcctta |
55356006 |
T |
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| Q |
131 |
gtcgcttcaataaattcct |
149 |
Q |
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| T |
55356007 |
gttgcttcaataaactcct |
55356025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 340
Target Start/End: Original strand, 55356119 - 55356234
Alignment:
| Q |
225 |
atcaacattaccacgtccttcacaactacatcgccaacttttacattgtcgtagctaaagaagccagaaactgctccagtaccatactgaattgcagcat |
324 |
Q |
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|||| ||||||| || ||| ||||||| || |||||||| ||| |||| ||||||||||| ||||||| |||||| |||||||| |||||||||||| |
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| T |
55356119 |
atcagcattacctggttctttacaactatgtcaccaactttgacactgtcatagctaaagaaaccagaaattgctccggtaccatattgaattgcagcag |
55356218 |
T |
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| Q |
325 |
gagtccctaaataaca |
340 |
Q |
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| T |
55356219 |
cagttcctagataaca |
55356234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 37818254 - 37818186
Alignment:
| Q |
31 |
ataccatattgggacagcatttccaactgatatctcttgaaatccaagtccaagcaaaccatcaaactt |
99 |
Q |
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|||||||| ||| ||||||||| |||| || ||||| ||||| ||||| ||||| || ||||||||||| |
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| T |
37818254 |
ataccatactggcacagcattttcaacagagatctcctgaaagccaagcccaagtaatccatcaaactt |
37818186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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