View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6729_low_13 (Length: 346)
Name: NF6729_low_13
Description: NF6729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6729_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 36116066 - 36115823
Alignment:
| Q |
24 |
ggcgggttcgggcctaaaaccccactccgatccaacccgccggttctcatatataggcccatctttgtccatttacagcttcggattggacggatt---- |
119 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36116066 |
ggcgggttcgggcctaaaaccccactccgatcaaacccgccggttctcatgtataggcccatctttgtccatttacagcttcggattggacgggttcggg |
36115967 |
T |
|
| Q |
120 |
-----------gcgggttacacggatcggttactgcgggtgagaactcagacaccaacaaaaattgttttcacgtccagaaaaa-ccaaaatcaaatcaa |
207 |
Q |
| |
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||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
36115966 |
ttacacgggttgcgggttgcacggatcggttactgcgggtaagtactcagacaccaacaaaaattgttttcacctccagaaaaaaccaaaatcaaatcaa |
36115867 |
T |
|
| Q |
208 |
ctatctcatatatagatctatatcatcaagcttcaaccaacaac |
251 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36115866 |
ctatctcatatatagatctatatcatcaagcttcaaccaacaac |
36115823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 36115796 - 36115745
Alignment:
| Q |
273 |
gagctttgagaagaagaataagaagaaggggcggttcttgcatggttgttct |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36115796 |
gagctttgagaagaagaataagaagaaggggcggttcttgcatggttgttct |
36115745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 8291360 - 8291603
Alignment:
| Q |
24 |
ggcgggttcgggcctaaaaccccactccgatccaacccgccggttctcatatataggcccatctttgtccatttacagcttcggattggacggatt---- |
119 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8291360 |
ggcgggttcgggcctaaaaccccactccgatcaaacccgccggttctcatgtataggcccatctttgtccatttacagcttcggattggacgggttcggg |
8291459 |
T |
|
| Q |
120 |
-----------gcgggttacacggatcggttactgcgggtgagaactcagacaccaacaaaaattgttttcacgtccagaaaa-accaaaatcaaatcaa |
207 |
Q |
| |
|
||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
8291460 |
ttacacgggttgcgggttgcacggatcggttactgcgggtaagtactcagacaccaacaaaaattgttttcacctccagaaaaaaccaaaatcaaatcaa |
8291559 |
T |
|
| Q |
208 |
ctatctcatatatagatctatatcatcaagcttcaaccaacaac |
251 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8291560 |
ctatctcatatatagatctatatcatcaagcttcaaccaacaac |
8291603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 8291630 - 8291681
Alignment:
| Q |
273 |
gagctttgagaagaagaataagaagaaggggcggttcttgcatggttgttct |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8291630 |
gagctttgagaagaagaataagaagaaggggcggttcttgcatggttgttct |
8291681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 5356707 - 5356764
Alignment:
| Q |
15 |
tggacatcaggcgggttcgggcctaaaaccccactccgatccaacccgccggttctca |
72 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
5356707 |
tggacatcaggcgggttcgggcccaaaaccccactccgatccaacccgtcggttctca |
5356764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 50442498 - 50442255
Alignment:
| Q |
24 |
ggcgggttcgggcctaaaaccccactccgatccaacccgccggttctcatatataggcccatctttgtccatttacagcttcggattggacggatt---- |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50442498 |
ggcgggttcgggcctaaaaccccactccgatcaaacccgccggttctcatgtataggcccatctttgtccatttacagcttcggattggacgggttcggg |
50442399 |
T |
|
| Q |
120 |
-----------gcgggttacacggatcggttactgcgggtgagaactcagacaccaacaaaaattgttttcacgtccagaaaaa-ccaaaatcaaatcaa |
207 |
Q |
| |
|
||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
50442398 |
ttacacgggttgcgggttgcacggatcggttactgcgggtaagtactcagacaccaacaaaaattgttttcacctccagaaaaaaccaaaatcaaatcaa |
50442299 |
T |
|
| Q |
208 |
ctatctcatatatagatctatatcatcaagcttcaaccaacaac |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50442298 |
ctatctcatatatagatctatatcatcaagcttcaaccaacaac |
50442255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 2351671 - 2351925
Alignment:
| Q |
15 |
tggacatcaggcgggttcgggcctaaaaccccactccgatccaacccgccggttctcatatataggc------ccatctttgtccatttacagcttcgga |
108 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||||||||||| |||||||||| ||||| | |||||||||| |||||||||||||||| |
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| T |
2351671 |
tggacatcgggcgggttcgggcccaaaaccccactctgatccaacccgtcggttctcatgtatagtcatagatccatctttgttcatttacagcttcgga |
2351770 |
T |
|
| Q |
109 |
ttggacggatt---------------gcgggttacacggatcggttactgcgggtgagaactcagacaccaacaaaaattgttttcacgtccagaaaaac |
193 |
Q |
| |
|
|||||||| || | ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2351771 |
ttggacgggttcggattacacgggttgtgggttacacggatcggttactgcgggtaagaactcagacacagacaaaaattgttttcacgtccagaaaa-- |
2351868 |
T |
|
| Q |
194 |
caaaatcaaatcaactatctcatatatagatctatatcatcaagcttcaaccaacaac |
251 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2351869 |
-aaaccaaaatcaattatctcatatatagatctatatcatcaagcttcaaccaacaac |
2351925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 2351949 - 2352000
Alignment:
| Q |
273 |
gagctttgagaagaagaataagaagaaggggcggttcttgcatggttgttct |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2351949 |
gagctttgagaagaagaataagaagaaggggcggttcttgcatggttgttct |
2352000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 50442228 - 50442177
Alignment:
| Q |
273 |
gagctttgagaagaagaataagaagaaggggcggttcttgcatggttgttct |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50442228 |
gagctttgagaagaagaataagaagaaggggcggttcttgcatggttgttct |
50442177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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