View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6729_low_14 (Length: 330)

Name: NF6729_low_14
Description: NF6729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6729_low_14
NF6729_low_14
[»] chr4 (1 HSPs)
chr4 (1-194)||(2431318-2431511)
[»] scaffold0127 (1 HSPs)
scaffold0127 (218-303)||(21183-21268)
[»] chr6 (2 HSPs)
chr6 (218-303)||(5746994-5747078)
chr6 (218-328)||(34093168-34093273)
[»] chr7 (1 HSPs)
chr7 (220-303)||(43344481-43344564)
[»] scaffold0620 (1 HSPs)
scaffold0620 (218-328)||(8502-8607)
[»] chr2 (1 HSPs)
chr2 (224-285)||(15817012-15817073)
[»] chr5 (1 HSPs)
chr5 (218-326)||(6159827-6159930)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 2431318 - 2431511
Alignment:
Q  1 ttatttggaagtgaatgttacataaatcgaggtggcagccgttagaagaatactatcaatgtatcctttattctatataccagactggtaaagctacagt 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2431318 ttatttggaagtgaatgtcacataaatcgaggtggcagccgttagaagaatactatcaatgtatcctttattctatataccagactggtaaagctacagt 2431417  T
Q  101 ctacaatcctcatgaaaatggtaacaaaaaactagtacaaccaattttaatatataactcatatagaccatccctatttagatttttgttatta 194  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| || |||||    
T  2431418 ctaaaatcctcatgaaaatggtaacaaaaaactagtacaaccaattttaatatataactcatatagaccgaccctatttagatttgtgctatta 2431511  T

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Target: scaffold0127 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 218 - 303
Target Start/End: Original strand, 21183 - 21268
Alignment:
Q  218 gcaaaatttatttaaaactcaatttctactcaagatgaacagatactagtaaattagagactacaaaagtgtcgtatataggcgga 303  Q
    |||||||||||||||||||| || ||| | ||||| ||||| | ||  |||||| |||||||||||| ||||||||||||||||||    
T  21183 gcaaaatttatttaaaactcgatctctgcacaagacgaacaaaaacctgtaaatcagagactacaaaggtgtcgtatataggcgga 21268  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 303
Target Start/End: Complemental strand, 5747078 - 5746994
Alignment:
Q  218 gcaaaatttatttaaaactcaatttctactcaagatgaacagatactagtaaattagagactacaaaagtgtcgtatataggcgga 303  Q
    |||||||||||||||||||| || ||||| ||||| ||||||| ||  ||| || | |||||||||| | ||||||||||||||||    
T  5747078 gcaaaatttatttaaaactcgatctctacacaagacgaacagaaacctgtagatca-agactacaaaggcgtcgtatataggcgga 5746994  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 34093273 - 34093168
Alignment:
Q  218 gcaaaatttatttaaaactcaatttctactcaagatgaacagatactagtaaattagagactacaaaagtgtcgtatataggcggagcggaacacccaaa 317  Q
    |||||||||||||||||||| || |||||| |||| ||| ||| ||  || ||||| | ||||||||||  |||||||||     ||| ||| |||||||    
T  34093273 gcaaaatttatttaaaactcgatctctactaaagacgaatagagaccggttaattatatactacaaaagcatcgtatata-----agctgaatacccaaa 34093179  T
Q  318 ataaacaccaa 328  Q
    |||||||||||    
T  34093178 ataaacaccaa 34093168  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 43344481 - 43344564
Alignment:
Q  220 aaaatttatttaaaactcaatttctactcaagatgaacagatactagtaaattagagactacaaaagtgtcgtatataggcgga 303  Q
    |||||||||||||||||| ||  || ||||||| ||| ||| ||  |||||  |||||||||||| ||| ||||||||||||||    
T  43344481 aaaatttatttaaaactcgatccctgctcaagacgaatagagaccggtaaaccagagactacaaatgtgccgtatataggcgga 43344564  T

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Target: scaffold0620 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 8607 - 8502
Alignment:
Q  218 gcaaaatttatttaaaactcaatttctactcaagatgaacagatactagtaaattagagactacaaaagtgtcgtatataggcggagcggaacacccaaa 317  Q
    |||||||||||||||||||| || |||||| |||| ||| ||| ||  || ||||| | ||||||||||  |||||||||     ||| ||| |||||||    
T  8607 gcaaaatttatttaaaactcgatctctactaaagacgaatagagaccggttaattatatactacaaaagcatcgtatata-----agctgaatacccaaa 8513  T
Q  318 ataaacaccaa 328  Q
    |||||||||||    
T  8512 ataaacaccaa 8502  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 15817012 - 15817073
Alignment:
Q  224 tttatttaaaactcaatttctactcaagatgaacagatactagtaaattagagactacaaaa 285  Q
    |||||| ||||||  || ||| ||||||||||||||| || ||| |||||||||||||||||    
T  15817012 tttattaaaaactagatctctgctcaagatgaacagagaccagtcaattagagactacaaaa 15817073  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 326
Target Start/End: Complemental strand, 6159930 - 6159827
Alignment:
Q  218 gcaaaatttatttaaaactcaatttctactcaagatgaacagatactagtaaattagagactacaaaagtgtcgtatataggcggagcggaacacccaaa 317  Q
    ||||| |||||| ||||||| ||  |||||||||| || |||| | |||| ||| |||||||||||| | |  |||||||||     |||||||||||||    
T  6159930 gcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaatcagagactacaaaggcgctgtatatagg-----cggaacacccaaa 6159836  T
Q  318 ataaacacc 326  Q
    |||||||||    
T  6159835 ataaacacc 6159827  T

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