View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6729_low_18 (Length: 297)
Name: NF6729_low_18
Description: NF6729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6729_low_18 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 2 - 297
Target Start/End: Complemental strand, 45946986 - 45946691
Alignment:
| Q |
2 |
ccaatgaccttataattatgatcaacaactttaccagattggcaacctccatgataatgccaaattgttgagacagtatcaatgcaatattgttctaaag |
101 |
Q |
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| T |
45946986 |
ccaatgaccttataattatgatcaacaactttaccagattgacaacctccatgataatgccaaattgttgagacagtatcaatgcaatattgttctaaag |
45946887 |
T |
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| Q |
102 |
aaaatgcagcattaggatgttttggtctcaaattcactggtaaaagcaacatcaagtctataagagcctggataggcatgtttttataatgaaatcttga |
201 |
Q |
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| T |
45946886 |
aaaatgcagcattaggatgttttggtctcaaattcactggtaaaagcaacatcaagtctataagagcctggataggcatgtttttataacgaaatcttga |
45946787 |
T |
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| Q |
202 |
gaatgcttttgagttaatcacatttatgattgttttcatgccttccacacacattctcaagtcttctggatccttgaaatagttgaaggtaactga |
297 |
Q |
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| T |
45946786 |
gaatgcttttgagttaatcacatttatgattgttttcatgccttccacacacattctcaagtcttctggatccttgaaatagttgaaggtaactga |
45946691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 139 - 297
Target Start/End: Complemental strand, 45939755 - 45939597
Alignment:
| Q |
139 |
tggtaaaagcaacatcaagtctataagagcctggataggcatgtttttataatgaaatcttgagaatgcttttgagttaatcacatttatgattgttttc |
238 |
Q |
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||||||||||||||||| |||||| |||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
45939755 |
tggtaaaagcaacatcatgtctattagagcctgaataggcatgttgtgataacgaaatcttgagaatgcttttgagttaatcacgtctatgattgttttc |
45939656 |
T |
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| Q |
239 |
atgccttccacacacattctcaagtcttctggatccttgaaatagttgaaggtaactga |
297 |
Q |
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| T |
45939655 |
atgctttccacatacattctcaaatcttctggatctttgaagtaattgaaggtaactga |
45939597 |
T |
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