View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6729_low_25 (Length: 254)

Name: NF6729_low_25
Description: NF6729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6729_low_25
NF6729_low_25
[»] chr6 (3 HSPs)
chr6 (13-254)||(32203360-32203601)
chr6 (110-161)||(16728150-16728201)
chr6 (42-103)||(10992931-10992992)
[»] chr4 (2 HSPs)
chr4 (40-165)||(47924334-47924456)
chr4 (37-165)||(41940606-41940731)
[»] chr2 (2 HSPs)
chr2 (41-165)||(45036116-45036237)
chr2 (41-103)||(44440424-44440486)
[»] chr1 (5 HSPs)
chr1 (41-103)||(16824167-16824229)
chr1 (33-200)||(3620936-3621100)
chr1 (40-103)||(11075848-11075911)
chr1 (37-103)||(9427724-9427790)
chr1 (127-165)||(39997647-39997685)
[»] chr3 (3 HSPs)
chr3 (37-163)||(17508659-17508782)
chr3 (58-103)||(43445468-43445513)
chr3 (135-163)||(31477959-31477987)
[»] chr8 (1 HSPs)
chr8 (41-108)||(15243476-15243543)
[»] chr5 (1 HSPs)
chr5 (40-95)||(12291852-12291907)
[»] chr7 (2 HSPs)
chr7 (40-108)||(5949631-5949699)
chr7 (40-92)||(12527314-12527366)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 32203601 - 32203360
Alignment:
Q  13 gttcactgagaacatgcatcagtgttaccattttcatgtaaaatttctataaaatgaaggatgtcactagcataagtgtgcaaagtatgatgatgaagat 112  Q
    |||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32203601 gttccctgagaacatgcatcagtgttatcatttccatgtaaaatttctataaaatgaaggatgtcactagcataagtgtgcaaagtatgatgatgaagat 32203502  T
Q  113 catcaacaaacaactcaactgatttcaagcaatcactctcataaataatgttgctctaccttttatcgtgacaaatatcaagatccatatggaaaacatg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |    
T  32203501 catcaacaaacaactcaactgatttcaagcaatcactctcataaataatgttgctctatcttttattgtgacaaatatcaagatccatatggataacacg 32203402  T
Q  213 caacccgaccaataatacatcgcctccaacttaaaagtgaga 254  Q
    |||| | ||||||||| ||||||||||||||| |||||||||    
T  32203401 caactcaaccaataatgcatcgcctccaacttcaaagtgaga 32203360  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 16728150 - 16728201
Alignment:
Q  110 gatcatcaacaaacaactcaactgatttcaagcaatcactctcataaataat 161  Q
    ||||| ||||||||||||||| || || |||||||||||||||| |||||||    
T  16728150 gatcaacaacaaacaactcaattgtttccaagcaatcactctcacaaataat 16728201  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 10992931 - 10992992
Alignment:
Q  42 attttcatgtaaaatttctataaaatgaaggatgtcactagcataagtgtgcaaagtatgat 103  Q
    |||| |||||||||  ||| ||| ||||| ||||||| |||||||||||||||| |||||||    
T  10992931 atttccatgtaaaacatctctaacatgaaagatgtcagtagcataagtgtgcaaggtatgat 10992992  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 47924334 - 47924456
Alignment:
Q  40 ccattttcatgtaaaatttctataaaatgaaggatgtcactagcataagtgtgcaaagtatgatgatgaagatcatcaacaaacaactcaactgatttca 139  Q
    ||||||||||||||||  |||  || ||||||||||||| |||||||||||||||| ||||||| ||   ||||||||| || ||  ||||||| || ||    
T  47924334 ccattttcatgtaaaacatctcgaatatgaaggatgtcagtagcataagtgtgcaaggtatgatcat---gatcatcaataatcaggtcaactgcttcca 47924430  T
Q  140 agcaatcactctcataaataatgttg 165  Q
    | |||||||||||| |||||||||||    
T  47924431 aacaatcactctcacaaataatgttg 47924456  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 41940606 - 41940731
Alignment:
Q  37 ttaccattttcatgtaaaatttctataaaatgaaggatgtcactagcataagtgtgcaaagtatgatgatgaagatcatcaacaaacaactcaactgatt 136  Q
    ||||||||| |||||||||  ||| ||| ||||||||||||  |||||||||||||||| ||   ||||| | || | |||| || ||  ||||||| ||    
T  41940606 ttaccatttccatgtaaaacatctctaatatgaaggatgtcggtagcataagtgtgcaaggt---atgatcacgaccgtcaataatcaggtcaactgctt 41940702  T
Q  137 tcaagcaatcactctcataaataatgttg 165  Q
    |||| |||||||||||| |||||||||||    
T  41940703 tcaaacaatcactctcacaaataatgttg 41940731  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 165
Target Start/End: Original strand, 45036116 - 45036237
Alignment:
Q  41 cattttcatgtaaaatttctataaaatgaaggatgtcactagcataagtgtgcaaagtatgatgatgaagatcatcaacaaacaactcaactgatttcaa 140  Q
    |||||||||||||||  ||| ||| ||||||||||||| |||||||||||||||| ||||||| ||    | |||||| || ||  ||||||| || |||    
T  45036116 cattttcatgtaaaacatctctaatatgaaggatgtcagtagcataagtgtgcaaggtatgatcat---caccatcaataatcaggtcaactgcttccaa 45036212  T
Q  141 gcaatcactctcataaataatgttg 165  Q
     |||||||||||| |||||||||||    
T  45036213 acaatcactctcacaaataatgttg 45036237  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 44440486 - 44440424
Alignment:
Q  41 cattttcatgtaaaatttctataaaatgaaggatgtcactagcataagtgtgcaaagtatgat 103  Q
    |||||||||||||||  ||| ||| ||||||||||| | |||||||||||||||| |||||||    
T  44440486 cattttcatgtaaaacatctctaatatgaaggatgttagtagcataagtgtgcaaggtatgat 44440424  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 16824167 - 16824229
Alignment:
Q  41 cattttcatgtaaaatttctataaaatgaaggatgtcactagcataagtgtgcaaagtatgat 103  Q
    ||||||||||||||   ||| ||| ||||||||||||| ||||||||||||||||||||||||    
T  16824167 cattttcatgtaaagcatctctaatatgaaggatgtcagtagcataagtgtgcaaagtatgat 16824229  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 3620936 - 3621100
Alignment:
Q  33 agtgttaccattttcatgtaaaatttctataaaatgaaggatgtcactagcataagtgtgcaaagtatgatgatgaagatcatcaacaaacaactcaact 132  Q
    ||||||| ||||| |||||||||| ||| ||| ||||||||||||| || ||||||| || || ||   ||||| | || || ||||||||| |||||      
T  3620936 agtgttatcatttccatgtaaaatatctctaatatgaaggatgtcagtaacataagtatgtaaggt---atgatcacgaccaacaacaaacatctcaaac 3621032  T
Q  133 gatttcaagcaatcactctcataaataatgttgctctaccttttatcgtgacaaatatcaagatccat 200  Q
    | || ||||||| |||||||| ||||||||||| | || | ||| | | |||||| ||||||||||||    
T  3621033 gcttccaagcaaccactctcacaaataatgttgttatagcctttgttgcgacaaaaatcaagatccat 3621100  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 11075911 - 11075848
Alignment:
Q  40 ccattttcatgtaaaatttctataaaatgaaggatgtcactagcataagtgtgcaaagtatgat 103  Q
    |||||||||||||||   ||| ||| ||||||||||| | |||||||||||||||| |||||||    
T  11075911 ccattttcatgtaaagcatctttaatatgaaggatgttagtagcataagtgtgcaaggtatgat 11075848  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 9427790 - 9427724
Alignment:
Q  37 ttaccattttcatgtaaaatttctataaaatgaaggatgtcactagcataagtgtgcaaagtatgat 103  Q
    ||||||||| |||||||||  ||| ||| ||||||||||||| ||| |||| ||||||| |||||||    
T  9427790 ttaccatttccatgtaaaacatctctaatatgaaggatgtcagtagtataaatgtgcaaggtatgat 9427724  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 39997647 - 39997685
Alignment:
Q  127 tcaactgatttcaagcaatcactctcataaataatgttg 165  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  39997647 tcaactgctttcaaacaatcactctcataaataatgttg 39997685  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 163
Target Start/End: Complemental strand, 17508782 - 17508659
Alignment:
Q  37 ttaccattttcatgtaaaatttctataaaatgaaggatgtcactagcataagtgtgcaaagtatgatgatgaagatcatcaacaaacaactcaactgatt 136  Q
    ||||| |||||||||||||  ||| ||| ||||||||||||| |||||||||| ||||| ||   ||||| | || |||||| || ||| ||||||| ||    
T  17508782 ttaccgttttcatgtaaaacatctctaatatgaaggatgtcagtagcataagtatgcaacgt---atgatcacgaccatcaataatcaagtcaactgctt 17508686  T
Q  137 tcaagcaatcactctcataaataatgt 163  Q
     ||| ||| |||||||| |||||||||    
T  17508685 ccaaacaagcactctcacaaataatgt 17508659  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 43445513 - 43445468
Alignment:
Q  58 tctataaaatgaaggatgtcactagcataagtgtgcaaagtatgat 103  Q
    ||||||| ||||||||| ||| |||||||||||||||| |||||||    
T  43445513 tctataatatgaaggatatcaatagcataagtgtgcaaggtatgat 43445468  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 31477959 - 31477987
Alignment:
Q  135 tttcaagcaatcactctcataaataatgt 163  Q
    |||||||||||||||||||||||||||||    
T  31477959 tttcaagcaatcactctcataaataatgt 31477987  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 15243543 - 15243476
Alignment:
Q  41 cattttcatgtaaaatttctataaaatgaaggatgtcactagcataagtgtgcaaagtatgatgatga 108  Q
    |||||||||||||||  ||| ||| ||||||||||| | |||||||||||||||| ||||||| ||||    
T  15243543 cattttcatgtaaaacatctctaatatgaaggatgtgagtagcataagtgtgcaaggtatgatcatga 15243476  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 12291852 - 12291907
Alignment:
Q  40 ccattttcatgtaaaatttctataaaatgaaggatgtcactagcataagtgtgcaa 95  Q
    ||||||||||||||||  ||| ||| ||||||||| || |||||||||||||||||    
T  12291852 ccattttcatgtaaaacatctctaatatgaaggatctcgctagcataagtgtgcaa 12291907  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 5949631 - 5949699
Alignment:
Q  40 ccattttcatgtaaaatttctataaaatgaaggatgtcactagcataagtgtgcaaagtatgatgatga 108  Q
    ||||||||||||||||| |||  || |||||||||||   ||| |||||||||||| ||||||| ||||    
T  5949631 ccattttcatgtaaaatatctcgaatatgaaggatgttggtagtataagtgtgcaaggtatgatcatga 5949699  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 12527366 - 12527314
Alignment:
Q  40 ccattttcatgtaaaatttctataaaatgaaggatgtcactagcataagtgtg 92  Q
    ||||||||||||||||  ||| ||| ||||||||||| | |||||||||||||    
T  12527366 ccattttcatgtaaaacgtctctaatatgaaggatgttagtagcataagtgtg 12527314  T

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