View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6729_low_29 (Length: 220)
Name: NF6729_low_29
Description: NF6729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6729_low_29 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 24651626 - 24651412
Alignment:
| Q |
2 |
tgaccaataacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttattctaaaagagtttattcctatgagtttcctagacacaaattc |
101 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |||| |||| ||||||||| |
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| T |
24651626 |
tgaccattaacattaaattgtttaaatatacaaacaaatatgatatgttgtaatttattctaaaa-agtttattcctataagttacctacacacaaatta |
24651528 |
T |
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| Q |
102 |
attttaatttttt-ataagtttcatttagtgatagctaattatttcaaaaataaataaatattagtgagagctaatcttattagggacaatatctgccga |
200 |
Q |
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| T |
24651527 |
attttaatttttttataagttgcatttagtgatagctaattatttcaaaaataaata----ttagtgagagctaatcttattagagacaatatctgccga |
24651432 |
T |
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| Q |
201 |
gagtttaatttcttcggcta |
220 |
Q |
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|||||||||||||||||||| |
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| T |
24651431 |
gagtttaatttcttcggcta |
24651412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 24653639 - 24653412
Alignment:
| Q |
1 |
gtgaccaataacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttattctaaaaga----gtttattcctatgagtttcctagacaca |
96 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | |||||||||| |||| |||||||||| |
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| T |
24653639 |
gtgaccattaacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttattacaaaaaaaaaaggttattcctataagttacctagacaca |
24653540 |
T |
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| Q |
97 |
aattcattttaattttttat---aagttt-catttagtgatagctaattatttcaaaaataaataaatattagtgagagctaatcttattagggacaata |
192 |
Q |
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|||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24653539 |
aattcattttaatttttttttttaagttttcatttagtgatagctaattatttcaaaaataaataaatattagtgagagctaatcttattagagacaata |
24653440 |
T |
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| Q |
193 |
tctgccgagagtttaatttcttcggcta |
220 |
Q |
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| T |
24653439 |
tctcccgagagtttaatttcttcggcta |
24653412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 29418556 - 29418655
Alignment:
| Q |
108 |
attttttataagtttcatttagtgatagctaattatttcaaaaataaataaatattagtgagagctaatcttattagggacaatatctgccgagagttta |
207 |
Q |
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|||||||||||||||||||||||||||| | ||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
29418556 |
attttttataagtttcatttagtgatagatgatttttt-aaaaataaataaatattagtgagagctaatcttattgaagacactatctgccgagagttta |
29418654 |
T |
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