View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6729_low_3 (Length: 834)
Name: NF6729_low_3
Description: NF6729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6729_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 608; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 136 - 816
Target Start/End: Original strand, 42095341 - 42096024
Alignment:
| Q |
136 |
tatgatcttgcacgacatggttacagttgcnnnnnnnnncacttcctagaactaaatatagtattattgggagaacacaaaaggggatacaaaccatgaa |
235 |
Q |
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| T |
42095341 |
tatgatcttgcacgacacggttacagttgcaaaaaaaa-cacttccaagaactaaatatagtattattgggagaacacaaaaggggatacaaaccatgaa |
42095439 |
T |
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| Q |
236 |
cataaaattgaacaaattaaacaacaaactatcatacggcttatgtcacttttcacaagtat----gtacatagttaacgatgcttggaggcaaagttat |
331 |
Q |
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| T |
42095440 |
cataaaattgaacaaattaaacaacaaactatcatacggcttatgtcacttttcacaagtatatatgtaaatagttaacgatgcttggaggcaaagttat |
42095539 |
T |
|
| Q |
332 |
taaccaaggcaagtgcattactagtaacttgagaaacaccaacaaccttagcaccaattgcagccttcaaattttgatccatatgaggactagaaaagtt |
431 |
Q |
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| T |
42095540 |
taaccaaggcaagtgcattactagtaacttgagaaacaccaacaaccttagcaccaattgcagccttcaaattttgatccatatgaggactagaaaagtt |
42095639 |
T |
|
| Q |
432 |
gtcaacacaagtgttctgatcagtaagagcagcactaacccaagtttgaacattacttatatgccaaaccaaatcctctctcttagccttacccaaaagt |
531 |
Q |
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| T |
42095640 |
gtcaacacaagtgttctgatcagtaagagcagcactaacccaagtttgaacattatttatatgccaaaccaaatcctctcccttagccttacccaaaagt |
42095739 |
T |
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| Q |
532 |
cctagctccttaaccgatttgttaagacggtccacgctactatccatgtttgctttgcaatcttgcacagcactatattcccttggcttaatccctttta |
631 |
Q |
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| T |
42095740 |
cctagctccttaaccgatttgttaagacggtccacgctactatccatgtttgctttgcaatcttgcacagcactatattcccttggcttaatccctttta |
42095839 |
T |
|
| Q |
632 |
ccttggaaaatttcttcatgaatgatgcacttgattgagtccttgatatgcttactgtcaaggcaacgatggctagtttttgctcgttttcgttaatcac |
731 |
Q |
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| T |
42095840 |
ccttggaaaatttcttcatgaatgatgcacttgattgagtccttgatatgcttactgtcaaggcaacgatggctagtttttgctcgttttcgttaatcat |
42095939 |
T |
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| Q |
732 |
gtttgcatagcccaagagagtttgaacacatacatcagggtaacgagtggctctacatgaggatttgataaagtttattgaattt |
816 |
Q |
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| T |
42095940 |
gtttgcatagcccaagagagtttgaacacatacatcagggtaacgagtggctctacacgaggatttgataaagtttattgaattt |
42096024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 42095214 - 42095301
Alignment:
| Q |
9 |
tcgaagaatatccaccgcattaactatataaccattatacaatcacaaatgaaataccttcaacaatataaataaatacattaatgat |
96 |
Q |
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| T |
42095214 |
tcgaaaaatatccaccgcattaactatataaccattatacaatcacaaatgaaataccttcaacaatataaataaatacattaatgat |
42095301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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