View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6729_low_30 (Length: 215)
Name: NF6729_low_30
Description: NF6729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6729_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 45860402 - 45860498
Alignment:
| Q |
1 |
cagtggaaatcatagctaaatggggagaaggaatagcataaaaaggaagatcaaaacaaagaaaacctaagtcatccatttaacctaaacaccaaac |
97 |
Q |
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| T |
45860402 |
cagtggaaatcatagctaaatggggagaaggaatagcataaaaaggaagatcaaaacaaagaaaacctaagtcacccatttaacctaaacacaaaac |
45860498 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 27004152 - 27004202
Alignment:
| Q |
47 |
aagatcaaaacaaagaaaacctaagtcatccatttaacctaaacaccaaac |
97 |
Q |
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| T |
27004152 |
aagatcaaaacaaagaaaacctaagcctctcatttaacctaaacacaaaac |
27004202 |
T |
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