View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6729_low_6 (Length: 569)
Name: NF6729_low_6
Description: NF6729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6729_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 27431092 - 27430556
Alignment:
| Q |
1 |
tcaaaattattttagcaatggttttagtcactttttaaattttttaatgttgtatgataaagtttgacaatggcttttcctacttagtattaaaattcta |
100 |
Q |
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| T |
27431092 |
tcaaaattattttagcaatggttttagtcactttttaaatttcttaatgttgtatgataaagtttgacaatggcttttcctacttagtattaaaattcta |
27430993 |
T |
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| Q |
101 |
acattacaatctttgatattgtgaaaagttgtggttaaatatgtctcatattgcggtcacaactgcggttgtaatacaatgttagaaatataaaaaccct |
200 |
Q |
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| T |
27430992 |
acatt---------------gtgaaaaattgcggtcaaatatgtctcatattgcggtcacaactgcggttgtaatacaatgttagatatataaaaaccct |
27430908 |
T |
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| Q |
201 |
aaaactgtggcatactcaatcttaatcccaataatgtagtagaaaaaacaaatcaaaacttgaagaatataaaataagattataa-gaaatgatattgca |
299 |
Q |
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| T |
27430907 |
agaactgtggcatattcaatcttaatcccaataatgtagtagaaaaaacaaatcaaaacttcaagataataaaataagattataatgaaatgatattgca |
27430808 |
T |
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| Q |
300 |
tggaaatgaaatttgatcataccactattttttgtgatccagttgcaccttttcaattccccaggctcagtagtcactagtggactttgttgatgtatag |
399 |
Q |
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| T |
27430807 |
tggaaatgaaatttgatcataccactattttttgtgatccagttgcaccttctcaattccccaggctcagtagtcactagtggactttgttgatgtatag |
27430708 |
T |
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| Q |
400 |
ttttagctactgcagtttctcttctttcatgtgaggaagatgaaatcaaacgaagtgctgatgaaatcctttcatccaatggagtcaaagaatcagcttg |
499 |
Q |
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| T |
27430707 |
ttttagctactgcagtttctcttctttcatgtgaagaagctgaaatcaaacgaagtgctgatgaaatcctttcatccaatggagtcaaagaatcagcttg |
27430608 |
T |
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| Q |
500 |
agaagagtcatttgaattttgtgacaaagataatgaaactgaagataaagat |
551 |
Q |
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| T |
27430607 |
agaagagtcatttgaattttgtgacaaagataatgaaactgaagataaagat |
27430556 |
T |
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