View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6730_high_7 (Length: 314)
Name: NF6730_high_7
Description: NF6730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6730_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 6657173 - 6657379
Alignment:
| Q |
18 |
aaaccctatttttccatcaaacatgaacaaaactctattttctgcaaataagttgagaatcagagatagatatatttatagcgtgaattcagtttaaaga |
117 |
Q |
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| T |
6657173 |
aaaccctatttttccatcaaacatgaacaaaactctattttctgcaaataagttgagaatcagagatagatatatttatagcgtgaattcagtttaaaga |
6657272 |
T |
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| Q |
118 |
atcagacagatatggatacattttgtttttctagcggttccaaaagaatcaagatatatattttctcttggaaaacaagttagattgataaatcaattat |
217 |
Q |
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| T |
6657273 |
atcagacagatatggatatattttgtttttctagcggttccaaaagaatcaagatatatattttctcttggaaaacaagttagattgataaatcaattat |
6657372 |
T |
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| Q |
218 |
caatatg |
224 |
Q |
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||||||| |
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| T |
6657373 |
caatatg |
6657379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 6665316 - 6665421
Alignment:
| Q |
18 |
aaaccctatttttccatcaaacatgaacaaaactctattttctgcaaata--agttgagaatcagagatagatatatttatagcgtgaattcagtttaaa |
115 |
Q |
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|||||||||||||| |||||| || |||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6665316 |
aaaccctatttttcaatcaaaaatcaacaaaaccctattttcagcaaatataagttgagaatcaga--tagatatatttatagcgtgaattcagtttaaa |
6665413 |
T |
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| Q |
116 |
gaatcaga |
123 |
Q |
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|||||||| |
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| T |
6665414 |
gaatcaga |
6665421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 6658288 - 6658374
Alignment:
| Q |
236 |
tatgttaagataatgtctatctctaaaaaacagcatagattaaagtctc--------ccataaaacatagctcaactaacaaatgtc |
314 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6658288 |
tatgttaagataatgtctatctctaaaaaacaacatagattaaagtctcatgcatgtccataaaacatagctcaactaacaaatgtc |
6658374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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