View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6730_high_8 (Length: 254)

Name: NF6730_high_8
Description: NF6730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6730_high_8
NF6730_high_8
[»] chr8 (3 HSPs)
chr8 (45-97)||(31128169-31128221)
chr8 (58-97)||(18809102-18809141)
chr8 (45-91)||(40225438-40225484)
[»] chr5 (4 HSPs)
chr5 (45-97)||(16047923-16047975)
chr5 (45-97)||(43067070-43067122)
chr5 (45-97)||(22614079-22614131)
chr5 (59-98)||(4300214-4300253)
[»] chr4 (3 HSPs)
chr4 (45-97)||(25644200-25644252)
chr4 (57-99)||(4778873-4778915)
chr4 (47-97)||(6923305-6923355)
[»] chr1 (6 HSPs)
chr1 (45-97)||(3898939-3898991)
chr1 (45-97)||(24982196-24982248)
chr1 (45-97)||(16264879-16264931)
chr1 (45-98)||(26441481-26441534)
chr1 (45-97)||(16266007-16266059)
chr1 (57-97)||(43679911-43679951)
[»] chr7 (2 HSPs)
chr7 (45-97)||(10464486-10464538)
chr7 (45-97)||(37231941-37231993)
[»] scaffold0781 (1 HSPs)
scaffold0781 (139-227)||(2621-2709)
[»] chr6 (2 HSPs)
chr6 (139-227)||(2214165-2214253)
chr6 (45-98)||(25163010-25163063)
[»] chr2 (1 HSPs)
chr2 (50-91)||(5852914-5852955)
[»] chr3 (1 HSPs)
chr3 (57-95)||(4239000-4239038)


Alignment Details
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 31128169 - 31128221
Alignment:
Q  45 tgtaatcacctgcggtaggagacccattgaagtctcctaccgtagcctaagcc 97  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  31128169 tgtagtcacctacggtaggagacccattgatgtctcctaccgtagcctaagcc 31128221  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 18809141 - 18809102
Alignment:
Q  58 ggtaggagacccattgaagtctcctaccgtagcctaagcc 97  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  18809141 ggtaggagacccattgaggtctcctaccgtagcctaagcc 18809102  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 40225484 - 40225438
Alignment:
Q  45 tgtaatcacctgcggtaggagacccattgaagtctcctaccgtagcc 91  Q
    |||| |||||| |||||||||||||||||| ||| ||||||||||||    
T  40225484 tgtagtcacctacggtaggagacccattgaggtcgcctaccgtagcc 40225438  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 16047975 - 16047923
Alignment:
Q  45 tgtaatcacctgcggtaggagacccattgaagtctcctaccgtagcctaagcc 97  Q
    |||| |||||| |||||| ||||||||||||||||||||||||||||||||||    
T  16047975 tgtagtcacctacggtagaagacccattgaagtctcctaccgtagcctaagcc 16047923  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 43067122 - 43067070
Alignment:
Q  45 tgtaatcacctgcggtaggagacccattgaagtctcctaccgtagcctaagcc 97  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  43067122 tgtagtcacctacggtaggagacccattgaggtctcctaccgtagcctaagcc 43067070  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 22614079 - 22614131
Alignment:
Q  45 tgtaatcacctgcggtaggagacccattgaagtctcctaccgtagcctaagcc 97  Q
    |||| |||||| |||||||||| ||||||| ||||||||||||||||||||||    
T  22614079 tgtagtcacctacggtaggagatccattgaggtctcctaccgtagcctaagcc 22614131  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 4300214 - 4300253
Alignment:
Q  59 gtaggagacccattgaagtctcctaccgtagcctaagccc 98  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  4300214 gtaggagacccattgaggtctcctaccttagcctaagccc 4300253  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 25644252 - 25644200
Alignment:
Q  45 tgtaatcacctgcggtaggagacccattgaagtctcctaccgtagcctaagcc 97  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  25644252 tgtagtcacctacggtaggagacccattgaggtctcctaccgtagcctaagcc 25644200  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 4778915 - 4778873
Alignment:
Q  57 cggtaggagacccattgaagtctcctaccgtagcctaagccct 99  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  4778915 cggtaggagacccattgagatctcctaccgtagcctaagccct 4778873  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 6923305 - 6923355
Alignment:
Q  47 taatcacctgcggtaggagacccattgaagtctcctaccgtagcctaagcc 97  Q
    ||||||||| ||||||||||||||||||  || |||||||| |||||||||    
T  6923305 taatcacctacggtaggagacccattgagatcacctaccgtcgcctaagcc 6923355  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 3898939 - 3898991
Alignment:
Q  45 tgtaatcacctgcggtaggagacccattgaagtctcctaccgtagcctaagcc 97  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  3898939 tgtagtcacctacggtaggagacccattgaggtctcctaccgtagcctaagcc 3898991  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 24982248 - 24982196
Alignment:
Q  45 tgtaatcacctgcggtaggagacccattgaagtctcctaccgtagcctaagcc 97  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  24982248 tgtagtcacctacggtaggagacccattgaggtctcctaccgtagcctaagcc 24982196  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 16264931 - 16264879
Alignment:
Q  45 tgtaatcacctgcggtaggagacccattgaagtctcctaccgtagcctaagcc 97  Q
    |||| |||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  16264931 tgtagtcacctacggtaggatacccattgaggtctcctaccgtagcctaagcc 16264879  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 26441534 - 26441481
Alignment:
Q  45 tgtaatcacctgcggtaggagacccattgaagtctcctaccgtagcctaagccc 98  Q
    |||| |||||| ||||| |||||||||||| ||||| |||||||||||||||||    
T  26441534 tgtagtcacctacggtaagagacccattgaggtctcgtaccgtagcctaagccc 26441481  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 16266059 - 16266007
Alignment:
Q  45 tgtaatcacctgcggtaggagacccattgaagtctcctaccgtagcctaagcc 97  Q
    |||| |||||| ||||||||||||||||||  ||||||||| |||||||||||    
T  16266059 tgtagtcacctacggtaggagacccattgagatctcctaccatagcctaagcc 16266007  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 43679951 - 43679911
Alignment:
Q  57 cggtaggagacccattgaagtctcctaccgtagcctaagcc 97  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  43679951 cggtaggagatccattaaagtctcctaccgtagcctaagcc 43679911  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 10464486 - 10464538
Alignment:
Q  45 tgtaatcacctgcggtaggagacccattgaagtctcctaccgtagcctaagcc 97  Q
    |||| |||||| |||||||||||||||||| |||||||| |||||||||||||    
T  10464486 tgtagtcacctacggtaggagacccattgaggtctcctatcgtagcctaagcc 10464538  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 37231941 - 37231993
Alignment:
Q  45 tgtaatcacctgcggtaggagacccattgaagtctcctaccgtagcctaagcc 97  Q
    |||| |||||| |||||||||||||||| | ||||||||||||||||||||||    
T  37231941 tgtagtcacctacggtaggagacccattaaggtctcctaccgtagcctaagcc 37231993  T

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Target: scaffold0781 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 2621 - 2709
Alignment:
Q  139 agaagatataagagaaaaaaggaccaacacggtgttgacaaagttcnnnnnnntaactcaacccagaaaaagattctgggtttaattta 227  Q
    |||||||||| |||||||| || |||||| ||||||||||||||||       ||||| |||||| ||||||||||| ||||| |||||    
T  2621 agaagatatacgagaaaaagggtccaacatggtgttgacaaagttcacaaaaataactaaacccataaaaagattctaggtttgattta 2709  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 2214165 - 2214253
Alignment:
Q  139 agaagatataagagaaaaaaggaccaacacggtgttgacaaagttcnnnnnnntaactcaacccagaaaaagattctgggtttaattta 227  Q
    |||||||||| |||||||| || |||||| ||||||||||||||||       ||||| |||||| ||||||||||| ||||| |||||    
T  2214165 agaagatatacgagaaaaagggtccaacatggtgttgacaaagttcacaaaaataactaaacccataaaaagattctaggtttgattta 2214253  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 25163063 - 25163010
Alignment:
Q  45 tgtaatcacctgcggtaggagacccattgaagtctcctaccgtagcctaagccc 98  Q
    |||| |||||| |||||| ||| ||||||| |||||||||||||||||||||||    
T  25163063 tgtagtcacctacggtagaagatccattgaggtctcctaccgtagcctaagccc 25163010  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 5852955 - 5852914
Alignment:
Q  50 tcacctgcggtaggagacccattgaagtctcctaccgtagcc 91  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  5852955 tcacctacggtaggagacccattgaagtcgcctaccgtagcc 5852914  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 4239000 - 4239038
Alignment:
Q  57 cggtaggagacccattgaagtctcctaccgtagcctaag 95  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  4239000 cggtaggagacccattgaggtctccaaccgtagcctaag 4239038  T

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