View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6730_high_9 (Length: 250)
Name: NF6730_high_9
Description: NF6730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6730_high_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 36367962 - 36367726
Alignment:
| Q |
14 |
gacatcaaaatcagcctatgctatatgtcattgtttctagaaattttctgcctctagttttgttataataaccgatgtaatgttttattcgacaggaaat |
113 |
Q |
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| T |
36367962 |
gacatcaaaatcagcctatgctatatgtcattgtttctagaaattttctgcctctagttttgttataataaccgatgtaatgttttattcgacaggaaat |
36367863 |
T |
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| Q |
114 |
agcgcctggtatatcatttgcagcaataggcctaatggacatgttcaacacaggaggagctgtagaagaggttgaaatccatagaacctccgacaaacag |
213 |
Q |
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| T |
36367862 |
agcgcctggtatatcatttgcagcaataggcctaatggacatgttcaacacaggaggagctatagaagaggttgaaatctatagaacctccgacaaacaa |
36367763 |
T |
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| Q |
214 |
gaactatttgatggcgaggtgacgacttcactcagtt |
250 |
Q |
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| T |
36367762 |
gaactatttgatggcgaggtgacgacttcactcagtt |
36367726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 21372516 - 21372426
Alignment:
| Q |
106 |
caggaaatagcgcctggtatatcatttgcagcaataggcctaatggacatgttcaacacaggaggagctgtagaagaggttgaaatccata |
196 |
Q |
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| T |
21372516 |
caggaaatcgcgcaaggtatttcatttgcaccaatagggctattggacatgttcaacaccggaggagctgtagaacattttgaaatccata |
21372426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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