View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6730_low_13 (Length: 299)

Name: NF6730_low_13
Description: NF6730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6730_low_13
NF6730_low_13
[»] chr3 (3 HSPs)
chr3 (40-299)||(52374297-52374563)
chr3 (1-43)||(52374209-52374251)
chr3 (249-298)||(42453261-42453310)
[»] chr8 (4 HSPs)
chr8 (249-295)||(15167624-15167670)
chr8 (249-295)||(15078606-15078652)
chr8 (249-298)||(34048915-34048964)
chr8 (112-170)||(9107786-9107844)
[»] chr2 (4 HSPs)
chr2 (249-298)||(29694229-29694278)
chr2 (249-299)||(21665907-21665957)
chr2 (112-175)||(29694084-29694147)
chr2 (249-296)||(37622531-37622578)
[»] chr4 (3 HSPs)
chr4 (237-297)||(4168081-4168141)
chr4 (249-298)||(52468137-52468186)
chr4 (254-298)||(40217086-40217130)
[»] scaffold1320 (1 HSPs)
scaffold1320 (249-295)||(1202-1248)
[»] chr5 (4 HSPs)
chr5 (249-299)||(2411935-2411985)
chr5 (251-298)||(2024845-2024892)
chr5 (255-298)||(24395590-24395633)
chr5 (249-298)||(11242523-11242572)
[»] chr7 (4 HSPs)
chr7 (249-298)||(27237630-27237679)
chr7 (249-299)||(23858920-23858969)
chr7 (249-298)||(23020689-23020738)
chr7 (188-216)||(36891527-36891555)
[»] chr1 (2 HSPs)
chr1 (252-295)||(10926154-10926197)
chr1 (252-298)||(39134930-39134976)
[»] chr6 (1 HSPs)
chr6 (110-175)||(20611502-20611567)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 40 - 299
Target Start/End: Original strand, 52374297 - 52374563
Alignment:
Q  40 ttaattgttaatgtaaattaattttaaacttgaagtcattattatgtagtaagttagcatctcacaaattagcagggccggatcttggaatgtgcaagaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  52374297 ttaattgttaatgtaaattaattttaaacttgaagtcattattatgtagtaagttagcatctcacaaattagcggggacggatcttggaatgtgcaagaa 52374396  T
Q  140 gctcaatggagttgggcctccttaaggtatgtgtctc-nnnnnnntaatttatagtctagtagtactactaagtattaccaaactaata--ttttttctt 236  Q
    ||||||||||||||||||||| |||| ||| ||||||        |||||||     || |||||||||||||||||||||||||||||  ||||||| |    
T  52374397 gctcaatggagttgggcctccctaagatatctgtctcaaaaataataattta-----taatagtactactaagtattaccaaactaatattttttttcct 52374491  T
Q  237 tattctccttct---------cacgcgttccatcaccatcactttattagactttccttttcttcttcccca 299  Q
    ||||| ||||||         |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52374492 tattcgccttctttctgataccacgcgttccatcaccatcactttatcagactttccttttcttcttcccca 52374563  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 52374209 - 52374251
Alignment:
Q  1 ttgccatccatgaagcaaacaatatatttaaagagattattaa 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  52374209 ttgccatccatgaagcaaacaatatatttaaagagattattaa 52374251  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 42453261 - 42453310
Alignment:
Q  249 cacgcgttccatcaccatcactttattagactttccttttcttcttcccc 298  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  42453261 cacgcgttccatcaccatcactctatcagactttccttttcttcttcccc 42453310  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 15167670 - 15167624
Alignment:
Q  249 cacgcgttccatcaccatcactttattagactttccttttcttcttc 295  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||    
T  15167670 cacgcgttccatcaccatcactctatcagactttccttttcttcttc 15167624  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 15078606 - 15078652
Alignment:
Q  249 cacgcgttccatcaccatcactttattagactttccttttcttcttc 295  Q
    |||||||||||||||||||||| ||| |||||||| |||||||||||    
T  15078606 cacgcgttccatcaccatcactctatcagactttcattttcttcttc 15078652  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 34048964 - 34048915
Alignment:
Q  249 cacgcgttccatcaccatcactttattagactttccttttcttcttcccc 298  Q
    ||||||||||||||||||||||  ||  ||||||||||||||||||||||    
T  34048964 cacgcgttccatcaccatcactccatcggactttccttttcttcttcccc 34048915  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 9107786 - 9107844
Alignment:
Q  112 cagggccggatcttggaatgtgcaagaagctcaatggagttgggcctccttaaggtatg 170  Q
    |||||||||||||| | | ||||||  ||||||||||||||||||||||  ||||||||    
T  9107786 cagggccggatctttggaggtgcaaacagctcaatggagttgggcctccccaaggtatg 9107844  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 29694229 - 29694278
Alignment:
Q  249 cacgcgttccatcaccatcactttattagactttccttttcttcttcccc 298  Q
    |||||||||||||||||||||||||| | | |||||||||||||||||||    
T  29694229 cacgcgttccatcaccatcactttatcaaattttccttttcttcttcccc 29694278  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 21665957 - 21665907
Alignment:
Q  249 cacgcgttccatcaccatcactttattagactttccttttcttcttcccca 299  Q
    |||||||||||||| |||||||  || ||||||||||||||||||||||||    
T  21665957 cacgcgttccatcatcatcactccatcagactttccttttcttcttcccca 21665907  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 29694084 - 29694147
Alignment:
Q  112 cagggccggatcttggaatgtgcaagaagctcaatggagttgggcctccttaaggtatgtgtct 175  Q
    |||||||| | |||||  |||||||  |||||||||||| ||||||||||||||||||| ||||    
T  29694084 cagggccgcaccttggggtgtgcaaagagctcaatggagctgggcctccttaaggtatgggtct 29694147  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 37622578 - 37622531
Alignment:
Q  249 cacgcgttccatcaccatcactttattagactttccttttcttcttcc 296  Q
    |||||||||||||| |||||||  || |||||||||||||||||||||    
T  37622578 cacgcgttccatcatcatcactccatcagactttccttttcttcttcc 37622531  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 4168141 - 4168081
Alignment:
Q  237 tattctccttctcacgcgttccatcaccatcactttattagactttccttttcttcttccc 297  Q
    ||||||| ||||||||||||||||||||||||||  ||  ||||| |||||||||||||||    
T  4168141 tattctctttctcacgcgttccatcaccatcactccatctgacttcccttttcttcttccc 4168081  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 52468137 - 52468186
Alignment:
Q  249 cacgcgttccatcaccatcactttattagactttccttttcttcttcccc 298  Q
    ||||||||||||||||||||||  || ||||||||||||| |||||||||    
T  52468137 cacgcgttccatcaccatcactccatcagactttcctttttttcttcccc 52468186  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 40217086 - 40217130
Alignment:
Q  254 gttccatcaccatcactttattagactttccttttcttcttcccc 298  Q
    |||||||||||||||||  || |||||||||||||||||||||||    
T  40217086 gttccatcaccatcactccatcagactttccttttcttcttcccc 40217130  T

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Target: scaffold1320 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 1202 - 1248
Alignment:
Q  249 cacgcgttccatcaccatcactttattagactttccttttcttcttc 295  Q
    |||||||||||||||||||||| ||| |||||||| |||||||||||    
T  1202 cacgcgttccatcaccatcactctatcagactttcattttcttcttc 1248  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 2411935 - 2411985
Alignment:
Q  249 cacgcgttccatcaccatcactttattagactttccttttcttcttcccca 299  Q
    |||| |||||||||||||||||  || ||||||||||||||||||||||||    
T  2411935 cacgtgttccatcaccatcactccatcagactttccttttcttcttcccca 2411985  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 298
Target Start/End: Complemental strand, 2024892 - 2024845
Alignment:
Q  251 cgcgttccatcaccatcactttattagactttccttttcttcttcccc 298  Q
    ||||||||||||||||||||  ||  ||||||||||||||||||||||    
T  2024892 cgcgttccatcaccatcactccatctgactttccttttcttcttcccc 2024845  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 24395590 - 24395633
Alignment:
Q  255 ttccatcaccatcactttattagactttccttttcttcttcccc 298  Q
    ||||||||||||||||  || |||||||||||||||||||||||    
T  24395590 ttccatcaccatcactccatcagactttccttttcttcttcccc 24395633  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 11242572 - 11242523
Alignment:
Q  249 cacgcgttccatcaccatcactttattagactttccttttcttcttcccc 298  Q
    |||||||||||||| |||||||  | | ||||||||||||||||||||||    
T  11242572 cacgcgttccatcatcatcactccaatggactttccttttcttcttcccc 11242523  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 27237679 - 27237630
Alignment:
Q  249 cacgcgttccatcaccatcactttattagactttccttttcttcttcccc 298  Q
    ||||||||||||||||||||||  ||  ||||||||||||||||||||||    
T  27237679 cacgcgttccatcaccatcactccatcggactttccttttcttcttcccc 27237630  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 23858920 - 23858969
Alignment:
Q  249 cacgcgttccatcaccatcactttattagactttccttttcttcttcccca 299  Q
    ||||||||||||||||||||||  || |||| |||||||||||||||||||    
T  23858920 cacgcgttccatcaccatcactgcatcagac-ttccttttcttcttcccca 23858969  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 23020738 - 23020689
Alignment:
Q  249 cacgcgttccatcaccatcactttattagactttccttttcttcttcccc 298  Q
    |||||||||||||||||||| |  ||  ||||||||||||||||||||||    
T  23020738 cacgcgttccatcaccatcattccatcggactttccttttcttcttcccc 23020689  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 36891527 - 36891555
Alignment:
Q  188 ttatagtctagtagtactactaagtatta 216  Q
    |||||||||||||||||||||||||||||    
T  36891527 ttatagtctagtagtactactaagtatta 36891555  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 10926197 - 10926154
Alignment:
Q  252 gcgttccatcaccatcactttattagactttccttttcttcttc 295  Q
    |||||||||||||||||||  || ||||||||||||||||||||    
T  10926197 gcgttccatcaccatcactccatcagactttccttttcttcttc 10926154  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 39134976 - 39134930
Alignment:
Q  252 gcgttccatcaccatcactttattagactttccttttcttcttcccc 298  Q
    |||||||||||||||||||  || ||| |||||||||||||||||||    
T  39134976 gcgttccatcaccatcactccatcagattttccttttcttcttcccc 39134930  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 20611502 - 20611567
Alignment:
Q  110 agcagggccggatcttggaatgtgcaagaagctcaatggagttgggcctccttaaggtatgtgtct 175  Q
    ||||||| |||| |||||  |||||||  |||||||||||| ||||||||| ||||||||| ||||    
T  20611502 agcagggtcggaccttggggtgtgcaaagagctcaatggagctgggcctccctaaggtatgggtct 20611567  T

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