View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6730_low_14 (Length: 277)
Name: NF6730_low_14
Description: NF6730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6730_low_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 23333995 - 23333750
Alignment:
| Q |
14 |
ggctggtgtgtaagattggaggtgggtggggtgctctttgcaaggcacggaggctgtaaccaaaacagccattgaagttgggtgtgactcatgaagcgga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23333995 |
ggctggtgtgtaagattggaggtgggtggggtgctctttgcaaggcacggaggctgcaaccaaaacagccattgaagttgggtgtgactcatgaagcgga |
23333896 |
T |
|
| Q |
114 |
caataaggttgtctatctgaagcatgttccttttccatcaatgcagacggacataacgaagttgaccgataaaattgtgtgccagaatgcagctgaagca |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23333895 |
caataaggttgtctatctgaagcatcttcgttttccatcaatgcagacggacataacgaagttgaccgataaaattgtgtgccggaatgcagctgaagca |
23333796 |
T |
|
| Q |
214 |
gtactcccccaaagaggttgataagtttgttttatgtaattttttg |
259 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23333795 |
gtactccccccaagaggttgataagtttgttttatgtaattttttg |
23333750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University