View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6730_low_17 (Length: 239)
Name: NF6730_low_17
Description: NF6730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6730_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 45948208 - 45947992
Alignment:
| Q |
17 |
aaatagaaagggaatgaaactgtggtgttacatttttaaacttcaata---------ctttcccatttacttgcttcctttgacaaacattgtaaaatgc |
107 |
Q |
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| T |
45948208 |
aaatagaaagggaatgaaactgtggtgttacatttttaaacttcaatagtttcaatactttcccatttacttgcttcctttgacaaacattgtaaaatgc |
45948109 |
T |
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| Q |
108 |
aaatcataaagaagaagaaagtatcagatggacatgaataacatagcgaatagattgatacgttgaaggcgtactcggaaaaaggttcagagttcgaccc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45948108 |
aaatcataaagaagaagaaagtatcagatggacatgaataacatagcgaatagattgatacgttgaaggcgtactcggaaaaaggttcagagttcgaccc |
45948009 |
T |
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| Q |
208 |
ctgcatctaacattttt |
224 |
Q |
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||||||||||||||||| |
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| T |
45948008 |
ctgcatctaacattttt |
45947992 |
T |
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