View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6730_low_2 (Length: 779)
Name: NF6730_low_2
Description: NF6730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6730_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 22 - 503
Target Start/End: Original strand, 36658025 - 36658511
Alignment:
| Q |
22 |
aatacataagaacttcattatagaaatttgcggtaaccaaaataattactaaataataatatacatatgctatttagaggtatatatcgtcactacattt |
121 |
Q |
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| T |
36658025 |
aatacataagaacttcattatagaaatttgcggtaaccaaaataattactaaataataatatacatatgctatttagaggtatatatcgtcactacattt |
36658124 |
T |
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| Q |
122 |
taggtctatnnnnnnnngaacctttgccttgtaattgtttacatgctggagagcatgcatcttggcaaagtgaatcttctgcaaatttgattttcaagca |
221 |
Q |
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| T |
36658125 |
taggtctataaaataaagaacctttgccttgtaattgtttacatgctggagagcatgcatcttggcaaagtgaatcttctgcaaatttgattttcaagca |
36658224 |
T |
|
| Q |
222 |
tatggacatgcattg----ttgcttacattcgggtaacgacatcttgccatctttaatgtcatcatcatatgcatctatatttggatcttcaagtgctac |
317 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36658225 |
tatggacatgcattgttgcttgcttacattcgggtaacgacatcttgccatctttaatgtcatcatcatatgcatctatatttggatcttcaagtgctac |
36658324 |
T |
|
| Q |
318 |
caccgtcaatgatatgtatnnnnnnngaaccaatatcactgccgaacctaagaatttgctagtcattgtattgaacgtgtgataaatgatactaaaaat- |
416 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
36658325 |
caccgtcaatgatatgtataaaaaaagaaccaatatcactgccgaacctaagaatttgctagtcattgtattcaatgtgtgataaatgatactaaaaata |
36658424 |
T |
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| Q |
417 |
gaaaggtctcgaaatacatgtaatatggaaatttgcacggaatatgtgtggcgaaaaatcaatggttgacttgttcataagagatga |
503 |
Q |
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| T |
36658425 |
aaaaggtcttgaaatacatgtaatatggaaatttgctcggaatatgtgtggcgaaaaatcaatggttgacttgttcataagagatga |
36658511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 578 - 679
Target Start/End: Original strand, 36659183 - 36659285
Alignment:
| Q |
578 |
ttttgggcttttgatttaaagcnnnnnnn-tgaagaaacttctcacacctgaaaattagtttggacgtacacaactaataaatatttaaattttgtatcc |
676 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36659183 |
ttttgggcttttgatttaaagcaaaaaaaatgaagaaacttttcacacctgaaaattagtttggacgtacacaactaataaatatttaaattttgtatcc |
36659282 |
T |
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| Q |
677 |
ttt |
679 |
Q |
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||| |
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| T |
36659283 |
ttt |
36659285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 741 - 779
Target Start/End: Original strand, 36659348 - 36659386
Alignment:
| Q |
741 |
atctcacctttcatgcttctcgcaagctcctcacttttc |
779 |
Q |
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| T |
36659348 |
atctcacctttcatgcttctcgcaagctcctcaattttc |
36659386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 9e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 13032290 - 13032395
Alignment:
| Q |
140 |
aacctttgccttgtaattgtttacatgctggagagcatgcatcttggcaaagtgaatcttctgcaaatttgattttcaagcatatggacatgcattgttg |
239 |
Q |
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|||||||||||| ||||||||||||||||||||||| || ||||| ||||||||| ||| ||||| |||||||||||||||||| |||||||||||||| |
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| T |
13032290 |
aacctttgcctttcaattgtttacatgctggagagcaagcttcttgacaaagtgaaacttgtgcaagtttgattttcaagcatatagacatgcattgttg |
13032389 |
T |
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| Q |
240 |
cttaca |
245 |
Q |
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||||| |
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| T |
13032390 |
tttaca |
13032395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 404 - 492
Target Start/End: Original strand, 13032555 - 13032644
Alignment:
| Q |
404 |
tgatactaaaaatga-aaggtctcgaaatacatgtaatatggaaatttgcacggaatatgtgtggcgaaaaatcaatggttgacttgttc |
492 |
Q |
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||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |
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| T |
13032555 |
tgatactaaaaatgagaaggtcttgaaatgcatgtaatatggaaatttgcttggaatatgtgtggtgaaaaattaatggttgacttgttc |
13032644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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