View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6730_low_3 (Length: 649)

Name: NF6730_low_3
Description: NF6730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6730_low_3
NF6730_low_3
[»] chr4 (1 HSPs)
chr4 (1-630)||(328135-328764)


Alignment Details
Target: chr4 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 1 - 630
Target Start/End: Complemental strand, 328764 - 328135
Alignment:
Q  1 aatgctgtagtcgcaacacatgatgtggtccacaacttgaaacccttggtgtagttatcatcaatgagatattgtagaaattttttctcaaatactaatg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  328764 aatgctgtagtcgcgacacatgatgtggtccacaacttgaaacccttggtgtagttaccatcaatgagatattgtagaaattttttctcaaatactaatg 328665  T
Q  101 aaattatttgattgtagtagcatgaaaatcctaaatatggtatagaaatgtcatcaaatattactcggttgtgcagcatcaattaattgcagttggaaga 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  328664 aaattatttgattgtagcagcatgaaaatcctaaatatggtatagaaatgtcatcaaatattactcggttgtgcagcatcaattaattgcagttggaaga 328565  T
Q  201 tattnnnnnnncaatagaaaccaccgttacaatttggggtggcaaaccattttaaatagtgtatatattaagcattttattatatgataaaagaaattaa 300  Q
    ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  328564 tattaaaaaaacaatagaaaccaccgttacaatttggggtggcaaaccattttaaatagtgtatatattaagtattttattatatgataaaagaaattaa 328465  T
Q  301 aagaatagaaagaacacaatacttgaagttataaccatgcaattgctccatgacttcaggggccatccaacaaggtgtaccaacaaaagtatttctcgac 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  328464 aagaatagaaagaacacaatacttgaagttataaccatgcaattgctccatgacttcaggggccatccaacaaggtgtgccaacaaaagtatttctcgac 328365  T
Q  401 cgttgccgatcaccggaatcaaacaaacaagcagatacaccgaaatcaccgagcttaaccgcaccgcgagaatcgatgagaacattacccgccttaacgt 500  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  328364 ctttgccgatcaccggaatcaaacaaacaagcagatacaccgaaatcaccgagcttaaccgcaccgcgagaatcaatgagaacattacccgccttaacgt 328265  T
Q  501 cacggtgaatgtgaccatgatgatgaagatactctaaacccttcaatacctccctgagcacagttgcaataacaacctcttcaaacccatcaggatgtgc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  328264 cacggtgaatgtgaccatgatgatgaagatactctaaacccttcaatacctccctgagcacagttgcaataacaacctcttcaaatccatcaggatgtgc 328165  T
Q  601 agctttcaatatgtgaagacatgaaccacc 630  Q
    ||||||||||||||||||||||||||||||    
T  328164 agctttcaatatgtgaagacatgaaccacc 328135  T

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