View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6730_low_4 (Length: 625)

Name: NF6730_low_4
Description: NF6730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6730_low_4
NF6730_low_4
[»] chr1 (2 HSPs)
chr1 (35-623)||(34973652-34974229)
chr1 (492-623)||(41413596-41413724)
[»] chr6 (5 HSPs)
chr6 (416-621)||(26976826-26977035)
chr6 (416-602)||(18967262-18967452)
chr6 (419-621)||(27874645-27874851)
chr6 (466-597)||(21965580-21965709)
chr6 (126-168)||(30986511-30986553)
[»] chr3 (2 HSPs)
chr3 (416-623)||(54545318-54545529)
chr3 (466-621)||(5819264-5819417)
[»] scaffold0074 (1 HSPs)
scaffold0074 (470-621)||(28028-28177)
[»] chr2 (3 HSPs)
chr2 (416-621)||(829654-829863)
chr2 (459-571)||(28715296-28715406)
chr2 (459-619)||(13840912-13841068)
[»] chr4 (3 HSPs)
chr4 (459-621)||(30946165-30946325)
chr4 (459-621)||(48697803-48697963)
chr4 (419-621)||(42270078-42270284)
[»] chr5 (2 HSPs)
chr5 (459-621)||(41722585-41722745)
chr5 (466-571)||(34359412-34359517)
[»] chr8 (1 HSPs)
chr8 (419-621)||(9440027-9440233)
[»] chr7 (2 HSPs)
chr7 (459-538)||(2324096-2324175)
chr7 (459-619)||(22510094-22510252)


Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 35 - 623
Target Start/End: Complemental strand, 34974229 - 34973652
Alignment:
Q  35 caactaaaataagatgtctgtctaaataggagaaacctcacaggagaaatttgatgggagaaactattttttctctctatttttcctctcttaactctac 134  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||    
T  34974229 caactaaaataagatgtctctctaaataagagaaacctcacaggagaaacttcatggaagaaactattttttctctctatttttcctctcttaactctac 34974130  T
Q  135 aaaatcaaaacacttgttgttgtgttactttgttatgggacgggatgtctcccttcattgccaatgtcttatatatagtcgagtaatttcgctaattcac 234  Q
    ||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||    
T  34974129 aaaatcaaaacacttgttgt---gttactttgttctgggacgggatgtctcccttcattacgaatgtcttatatatagtggagtaatttcgctaattcac 34974033  T
Q  235 ttattctaattattgcacctattgcgattttcaactttgtgcagtatactagaatgagaactaagaaaattatcggaaacaatgtttgactttcacctag 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34974032 ttattctaattattgcacctattgcgattttcaactttgtgcagtaaactagaatgagaactaagaaaattatcggaaacaatgtttgactttcacctag 34973933  T
Q  335 agtgactttacacatgttcaaacatgttcacaatctcccacttaagtctacttttataagctttcagtaggccatacgattgaggatcaacaccatataa 434  Q
    ||||||||||||||||          |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34973932 agtgactttacacatg----------ttcacaatctcccacttaggtctacttttataagctttcagtaggccatacgattgaggatcaacaacatataa 34973843  T
Q  435 acttgtcaatattgattttgtcgt--catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaa 532  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34973842 acttgtcaatattgattttgtcgtcacatcttttaggttatcattagtgtgaatcttcagcatatccacacttctctcttccactacttctcaaataaaa 34973743  T
Q  533 tgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttcacaatacacaat 623  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  34973742 tgatattaaatgcctatttgcttcgtccttgaatgaaaaaagttggatttcatacaatgtgcaagacactttaactttcataatacacaat 34973652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 492 - 623
Target Start/End: Original strand, 41413596 - 41413724
Alignment:
Q  492 gcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatg 591  Q
    ||||||||||| |||  || |||| ||||||| ||  ||||||||||| ||||||||  ||| | ||||||||||| ||   | |||||| | |||||||    
T  41413596 gcatatccacatttccttcatccattacttctgaac-aaaatgatattgaacgcctacatgccttgtccttgaatggaag--gctggattacttgcaatg 41413692  T
Q  592 tgcaagacactttaactttcacaatacacaat 623  Q
    ||||||||||| ||||| |||||||| |||||    
T  41413693 tgcaagacactctaactatcacaatatacaat 41413724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 416 - 621
Target Start/End: Original strand, 26976826 - 26977035
Alignment:
Q  416 gaggatcaacaccatataaacttgtcaatattgat----tttgtcgt--catctgttaggttatcattggtgtgaatcttcagcatatccacacttctct 509  Q
    ||||||| ||||||||||||||||||| | |||||    |||||| |  |||||| |||||||||||| |||||||||||  |||||||||| |||| ||    
T  26976826 gaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttttgcatatccacgcttccct 26976925  T
Q  510 cttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactt 609  Q
    | ||||||||||||  || ||||||||||| ||| ||||| |||||||||||||||||  ||||| |||||| | ||||||||||||| |||| | |||     
T  26976926 cctccactacttctcgaacaaaatgatattgaacacctatgtgcttcgtccttgaatg--aaaagctggattccttgcaatgtgcaaggcactctgactg 26977023  T
Q  610 tcacaatacaca 621  Q
    ||||||||||||    
T  26977024 tcacaatacaca 26977035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 416 - 602
Target Start/End: Complemental strand, 18967452 - 18967262
Alignment:
Q  416 gaggatcaacaccatataaacttgtcaatattgatt----ttgtcgtca--tctgttaggttatcattggtgtgaatcttcagcatatccacacttctct 509  Q
    ||||||| |||||||||||||||||||  |||||||    ||||| |||  |||| ||| ||||||||||||||||||||| |||| |||||||||| ||    
T  18967452 gaggatcgacaccatataaacttgtcagcattgattggttttgtcatcacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 18967353  T
Q  510 cttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatgtgcaagacact 602  Q
    | |||||||||| |  || ||||||||||| ||||||||| || ||||||||||||||  |||||||||||| | ||||||||| ||| ||||    
T  18967352 cctccactacttgtcgaacaaaatgatatttaacgcctatgtgtttcgtccttgaatg--aaaagttggattccttgcaatgtgtaaggcact 18967262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 419 - 621
Target Start/End: Original strand, 27874645 - 27874851
Alignment:
Q  419 gatcaacaccatataaacttgtcaatattgat----tttgtcgt--catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctctt 512  Q
    |||| ||||||||||||||||||| | |||||    |||||| |  |||||| |||||||||||| |||||||||||| |||||||||| ||||  || |    
T  27874645 gatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcct 27874744  T
Q  513 ccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttca 612  Q
    | ||||||||   || ||||||||||| || |||||| || ||||||||||||||  ||||| |||||| | |||||| |||||| |||| | ||| |||    
T  27874745 ctactacttcgcgaacaaaatgatattgaatgcctatgtgtttcgtccttgaatg--aaaagctggattccttgcaatatgcaaggcactctgactgtca 27874842  T
Q  613 caatacaca 621  Q
    |||||||||    
T  27874843 caatacaca 27874851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 466 - 597
Target Start/End: Complemental strand, 21965709 - 21965580
Alignment:
Q  466 taggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaa 565  Q
    |||||||||||||||||||   ||| |||||||||| ||||  || | |||||||||| ||| ||||| ||||| ||||||| | |||| ||| ||||||    
T  21965709 taggttatcattggtgtgagcattctgcatatccacccttcattccttcactacttctcaaacaaaataatattgaacgcctgtgtgctccgttcttgaa 21965610  T
Q  566 tgaaaaaagttggatttcatgcaatgtgcaag 597  Q
    ||  |||||||||||| | || ||||||||||    
T  21965609 tg--aaaagttggattccttgaaatgtgcaag 21965580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 30986553 - 30986511
Alignment:
Q  126 taactctacaaaatcaaaacacttgttgttgtgttactttgtt 168  Q
    ||||||||| | | |||||||||||||||||||||||||||||    
T  30986553 taactctactagaacaaaacacttgttgttgtgttactttgtt 30986511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 416 - 623
Target Start/End: Complemental strand, 54545529 - 54545318
Alignment:
Q  416 gaggatcaacaccatataaacttgtcaatattgat----tttgtcgt--catctgttaggttatcattggtgtgaatcttcagcatatccacacttctct 509  Q
    ||||||| ||||||||||||||||||| | |||||    |||||| |  |||||| |||||||||||| |||||||||||| |||||||||| ||||  |    
T  54545529 gaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctgcatatccacgcttcctt 54545430  T
Q  510 cttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactt 609  Q
    | || |||||||||  |||||||||||||| ||||||||| || ||||||||||||||  |||||||| ||| | ||||||||||||  |||| | |||     
T  54545429 cctctactacttctcgaataaaatgatattgaacgcctatgtgtttcgtccttgaatg--aaaagttgaattccttgcaatgtgcaatgcactctgactg 54545332  T
Q  610 tcacaatacacaat 623  Q
    ||||||||||||||    
T  54545331 tcacaatacacaat 54545318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 466 - 621
Target Start/End: Original strand, 5819264 - 5819417
Alignment:
Q  466 taggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaa 565  Q
    |||||||||||| |||||||||||  |||||||||| |||| ||| ||||||||||||  || ||||||||||| ||||||||| |||||||||||||||    
T  5819264 taggttatcattagtgtgaatcttttgcatatccacgcttccctcctccactacttctcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaa 5819363  T
Q  566 tgaaaaaagttggatttcatgcaatgtgcaagacactttaactttcacaatacaca 621  Q
    ||  ||||| |||||| | ||||||||||||| |||| | ||| ||||||||||||    
T  5819364 tg--aaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacaca 5819417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 470 - 621
Target Start/End: Original strand, 28028 - 28177
Alignment:
Q  470 ttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaa 569  Q
    ||||||||||||||||||||| |||| |||||||||| ||| ||||||||||||  || ||||||||||| ||||||||| || ||||||||||||||      
T  28028 ttatcattggtgtgaatcttctgcatgtccacacttccctcctccactacttctcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatg-- 28125  T
Q  570 aaaagttggatttcatgcaatgtgcaagacactttaactttcacaatacaca 621  Q
    ||||| |||||| | ||||||||||||| |||| | ||| ||||||||||||    
T  28126 aaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacaca 28177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 416 - 621
Target Start/End: Complemental strand, 829863 - 829654
Alignment:
Q  416 gaggatcaacaccatataaacttgtcaatattgat----tttgtcgt--catctgttaggttatcattggtgtgaatcttcagcatatccacacttctct 509  Q
    ||||||| ||||||||||||||||||| | |||||    |||||| |  |||||| |||||||||||| ||||||||||||  ||||||||| ||||  |    
T  829863 gaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctacatatccacgcttcctt 829764  T
Q  510 cttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactt 609  Q
    | || |||||||||  || ||||||||||| ||||||||| || ||||||||||||||  ||||| |||||| | ||||||||||||| |||| | |||     
T  829763 cctctactacttctcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatg--aaaagctggattccttgcaatgtgcaaggcactctgactg 829666  T
Q  610 tcacaatacaca 621  Q
    ||||||||||||    
T  829665 tcacaatacaca 829654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 571
Target Start/End: Complemental strand, 28715406 - 28715296
Alignment:
Q  459 catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgt 558  Q
    |||||| ||||||||||||||||||||||||  |||||| |||||| | ||| ||||| ||| ||  || ||||||||||| ||| ||||| |||||| |    
T  28715406 catctgctaggttatcattggtgtgaatcttatgcatattcacactcc-ctcctccac-actactcgaacaaaatgatattgaacacctatgtgcttcat 28715309  T
Q  559 ccttgaatgaaaa 571  Q
    ||||||| |||||    
T  28715308 ccttgaacgaaaa 28715296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 619
Target Start/End: Original strand, 13840912 - 13841068
Alignment:
Q  459 catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgt 558  Q
    |||| |||||||||||| | || ||||||||| ||| ||||| |||||  || || ||||||| || || ||||||||||| ||| | ||| || || ||    
T  13840912 catccgttaggttatcacttgtctgaatcttctgcacatccatacttccttcgtcgactactt-ttgaacaaaatgatattgaacacttatgtgttttgt 13841010  T
Q  559 ccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttcacaataca 619  Q
    ||||||||||||||   || ||||| ||||||||| ||| || | ||| | ||||||||||    
T  13841011 ccttgaatgaaaaa---tgaatttcttgcaatgtgaaaggcattctaattgtcacaataca 13841068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 459 - 621
Target Start/End: Original strand, 30946165 - 30946325
Alignment:
Q  459 catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgt 558  Q
    |||||| ||| ||||||||||||||||||||| |||| |||||||||| ||| || ||||||||   || ||||||||||| ||||||||| || |||||    
T  30946165 catctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgt 30946264  T
Q  559 ccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttcacaatacaca 621  Q
    |||||||||  ||||| |||||| | ||||||||||||| |||| | ||| ||||||||||||    
T  30946265 ccttgaatg--aaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacaca 30946325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 459 - 621
Target Start/End: Original strand, 48697803 - 48697963
Alignment:
Q  459 catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgt 558  Q
    |||||| ||| ||||||||||||||||||||| |||| |||||||||| ||| || ||||||||   || ||||||||||| ||||||||| || |||||    
T  48697803 catctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgt 48697902  T
Q  559 ccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttcacaatacaca 621  Q
    |||||||||  ||||| |||||| | |||||| |||||| |||| | ||| ||||||||||||    
T  48697903 ccttgaatg--aaaagctggattccttgcaatatgcaaggcactctgactgtcacaatacaca 48697963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 419 - 621
Target Start/End: Complemental strand, 42270284 - 42270078
Alignment:
Q  419 gatcaacaccatataaacttgtcaatattgat----tttgtcgt--catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctctt 512  Q
    |||| ||||||||||||||||||| | |||||    |||||| |  |||||| |||||||||||| |||||||||||| |||||||||| ||||  || |    
T  42270284 gatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcct 42270185  T
Q  513 ccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttca 612  Q
    | ||||||||   || ||||||||||| ||||||||| || ||||||||||||||  ||||| |||||| | |||||| |||||| |||| | ||| |||    
T  42270184 ctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatg--aaaagctggattccttgcaatatgcaaggcactctgactgtca 42270087  T
Q  613 caatacaca 621  Q
    |||||||||    
T  42270086 caatacaca 42270078  T

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Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 459 - 621
Target Start/End: Complemental strand, 41722745 - 41722585
Alignment:
Q  459 catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgt 558  Q
    |||||| ||| ||||||||||||||||||||| |||| |||||||||| ||| || ||||||||   || ||||||||||| ||||||||| || |||||    
T  41722745 catctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgt 41722646  T
Q  559 ccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttcacaatacaca 621  Q
    |||||||||  ||||| |||||| | |||||| |||||| |||| | ||| ||||||||||||    
T  41722645 ccttgaatg--aaaagctggattccttgcaatatgcaaggcactctgactgtcacaatacaca 41722585  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 466 - 571
Target Start/End: Complemental strand, 34359517 - 34359412
Alignment:
Q  466 taggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaa 565  Q
    ||||||||||||||||||||||||  |||||||||| |||| ||| ||||||||||||  || ||||||||||| |||||| || |||||||||||||||    
T  34359517 taggttatcattggtgtgaatcttttgcatatccacgcttccctcctccactacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaa 34359418  T
Q  566 tgaaaa 571  Q
    ||||||    
T  34359417 tgaaaa 34359412  T

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Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 419 - 621
Target Start/End: Original strand, 9440027 - 9440233
Alignment:
Q  419 gatcaacaccatataaacttgtcaatattgat----tttgtcgt--catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctctt 512  Q
    |||| ||||||||||||||||||| | |||||    |||||| |  |||||| |||||||||||| |||||||||||| |||||||||| ||||  || |    
T  9440027 gatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcct 9440126  T
Q  513 ccactacttcttaaataaaatgatattaaacgcctatttgcttcgtccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttca 612  Q
    | ||||||||   || ||||||||||| || |||||| || ||||||||||||||  ||||| |||||| | |||||| |||||| |||| | ||| |||    
T  9440127 ctactacttcgcgaacaaaatgatattgaatgcctatgtgtttcgtccttgaatg--aaaagctggattccttgcaatatgcaaggcactctgactgtca 9440224  T
Q  613 caatacaca 621  Q
    |||||||||    
T  9440225 caatacaca 9440233  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 459 - 538
Target Start/End: Original strand, 2324096 - 2324175
Alignment:
Q  459 catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatat 538  Q
    |||||| |||| ||||||||||||| |||||| ||||||||||||||| ||| |  |||||||||  || ||||||||||    
T  2324096 catctgctagggtatcattggtgtggatcttctgcatatccacacttccctcctttactacttctcgaacaaaatgatat 2324175  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 619
Target Start/End: Complemental strand, 22510252 - 22510094
Alignment:
Q  459 catctgttaggttatcattggtgtgaatcttcagcatatccacacttctctcttccactacttcttaaataaaatgatattaaacgcctatttgcttcgt 558  Q
    |||||| | |||||||||  || ||||||||| |||||||||||  || ||| ||||| |||  |  || |||||| |||| ||||||| | ||| ||||    
T  22510252 catctgcttggttatcatcagtttgaatcttcggcatatccacatgtccctcctccacaactaatacaaaaaaatggtattgaacgcctttgtgcatcgt 22510153  T
Q  559 ccttgaatgaaaaaagttggatttcatgcaatgtgcaagacactttaactttcacaataca 619  Q
    | | ||||  | ||||||||||| | || ||||||||||||||| | ||| ||||||||||    
T  22510152 cttggaat--acaaagttggattgcttgaaatgtgcaagacactctgactatcacaataca 22510094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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