View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6730_low_7 (Length: 513)

Name: NF6730_low_7
Description: NF6730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6730_low_7
NF6730_low_7
[»] chr6 (2 HSPs)
chr6 (48-345)||(69683-69980)
chr6 (445-493)||(70000-70048)
[»] chr4 (2 HSPs)
chr4 (200-345)||(32427502-32427647)
chr4 (218-333)||(32421677-32421792)


Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 48 - 345
Target Start/End: Original strand, 69683 - 69980
Alignment:
Q  48 ggttggtgggtggatttgatctgagttagttagttagaatgtcgaacatagacattgaagggatcttgaatcaactacctaacgatggtcgtgttcctaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  69683 ggttggtgggtggatttgatctgagttagttagttagaatgtcgaacatagacattgaagggatcttgaatcaactacctaacgatggtcgtgttcctaa 69782  T
Q  148 gaccaagattgtttgtactttgggtcctgcttccagatctgttgagatgattgagaagcttcttaaagctggtatgaatgttgctcgtttcaatttctca 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  69783 gaccaagattgtttgtactttgggtcctgcttccagatctgttgagatgattgagaagcttcttaaagctggtatgaatgttgctcgtttcaatttctca 69882  T
Q  248 catggtactcatcaatatcatcaggaaacccttgataatctcaagtctgctatgcactctactggtattctctgcgctgtcatgctcgacaccaaggt 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  69883 catggtactcatcaatatcatcaggaaacccttgataatctcaagtctgctatgcactctactggtattctctgcgctgtcatgctcgacaccaaggt 69980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 445 - 493
Target Start/End: Original strand, 70000 - 70048
Alignment:
Q  445 atcaatgaaattattaactttttcatgtatgtaaatgtgctctctactg 493  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  70000 atcaattaaattattaactttttcatgtatgtaaatgtgctctctactg 70048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 345
Target Start/End: Complemental strand, 32427647 - 32427502
Alignment:
Q  200 gagaagcttcttaaagctggtatgaatgttgctcgtttcaatttctcacatggtactcatcaatatcatcaggaaacccttgataatctcaagtctgcta 299  Q
    |||||||||||  |||| || |||||||| ||||||||||| ||||| |||||| |  || |||||||||||||||| ||||||||||| |   | ||||    
T  32427647 gagaagcttctacaagcaggcatgaatgtcgctcgtttcaacttctctcatggttcctatgaatatcatcaggaaacgcttgataatcttagaaccgcta 32427548  T
Q  300 tgcactctactggtattctctgcgctgtcatgctcgacaccaaggt 345  Q
    ||||   ||| |||||||||||||| |||||||| ||||| |||||    
T  32427547 tgcaaaataccggtattctctgcgccgtcatgcttgacactaaggt 32427502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 333
Target Start/End: Complemental strand, 32421792 - 32421677
Alignment:
Q  218 ggtatgaatgttgctcgtttcaatttctcacatggtactcatcaatatcatcaggaaacccttgataatctcaagtctgctatgcactctactggtattc 317  Q
    |||||||| |||||  | ||||| ||||| |||||| ||||| | |||||||||||||| ||||||||||| |   |||||||| |   ||| || ||||    
T  32421792 ggtatgaacgttgccagattcaacttctctcatggttctcatgactatcatcaggaaactcttgataatcttagagctgctatggagaataccggaattc 32421693  T
Q  318 tctgcgctgtcatgct 333  Q
    ||||||| ||||||||    
T  32421692 tctgcgccgtcatgct 32421677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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