View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6730_low_8 (Length: 433)
Name: NF6730_low_8
Description: NF6730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6730_low_8 |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 44 - 433
Target Start/End: Original strand, 30249158 - 30249549
Alignment:
| Q |
44 |
atcatacaacagcttgtccataaaggtcgcagca-----tccattttgcatttactgtctagtcagagctttgaaaatagactaaaattggacttgccaa |
138 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30249158 |
atcatacaacagcttgtccataaaggtcgcagcactgtgtccattttgcatttactgtctagtcagagctttgagaatagactaaaattggacttgccaa |
30249257 |
T |
|
| Q |
139 |
ctccactacaaacggagcaccctatgttttatattttgtattctagcactattaacggaacactttgcctttccaaaggcgataaaacatttgtattgtg |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30249258 |
ctccactacaaacggagcaccctatgttttatattttgtattctagcactattaacggaacactttgcctttccaaaggcgataaaacatttgtattgtg |
30249357 |
T |
|
| Q |
239 |
gaatccaacaacagatgaagtcaatgtcattcctcccagtcctagggattctgtgtcacctgattgcagcgctatgatttcttttcatggatttggttat |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30249358 |
gaatccaacaacagatgaagtcaatgtcattcctcccagtcctagggattctgtgtcacctga---cagcgctatgatttcttttcatggatttggttat |
30249454 |
T |
|
| Q |
339 |
aaccgtgttagagatgactatacgattattaagtgtctaaataatcctaaagcattggagatttatagtctaagatgtaacacttggaaaaaact |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30249455 |
aaccgtgttagagatgactatacgattattaagtgtctaaataatcctaaagcatgggagatttatagtctaagatgtaacacttggaaaaaact |
30249549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 30234724 - 30234766
Alignment:
| Q |
5 |
agatgaacattgccttgccactatacagaaattctctgaatca |
47 |
Q |
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| T |
30234724 |
agatgaacattgccttgccactatacagaaattctctgaatca |
30234766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 25627904 - 25627942
Alignment:
| Q |
395 |
ggagatttatagtctaagatgtaacacttggaaaaaact |
433 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
25627904 |
ggagatttatagtctaagatgtaacacttggaaagaact |
25627942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 367
Target Start/End: Original strand, 25627762 - 25627807
Alignment:
| Q |
322 |
ttcatggatttggttataaccgtgttagagatgactatacgattat |
367 |
Q |
| |
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||||||||||||||||| ||| || |||||||||||||| |||||| |
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| T |
25627762 |
ttcatggatttggttatgaccatgctagagatgactataagattat |
25627807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 83 - 377
Target Start/End: Original strand, 4027234 - 4027531
Alignment:
| Q |
83 |
tttgcatttactgtctagtcagagctttgaaaatagactaaaattggacttgccaactccactacaaacggagcaccctatgttttatattttgtattct |
182 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| |||| ||||||| ||||||||| | |||| |
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| T |
4027234 |
tttgcatttactgtctagtcagagctttgagaatagacttaaattggacttgccaactccacttcaacaggaggaccctatcttttatattaggggttct |
4027333 |
T |
|
| Q |
183 |
agcactattaacggaacactttgcctttccaaaggcgataaaa---catttgtattgtggaatccaacaacagatgaagtcaatgtcattcctcccagtc |
279 |
Q |
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||||||| ||||||||| |||||||||||||| | ||| | | || ||||||||||||||||||||||||||||| || |||||||||| |||||| |
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| T |
4027334 |
agcactaataacggaaccctttgcctttccaatgcagatgacagtacacttgtattgtggaatccaacaacagatgaaatcgttgtcattccttccagtc |
4027433 |
T |
|
| Q |
280 |
ctagggattctgtgtcacctgattgcagcgctatgatttcttttcatggatttggttataaccgtgttagagatgactatacgattattaagtgtcta |
377 |
Q |
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||| ||| |||||||||||| |||| ||| || |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||| |
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| T |
4027434 |
ctatggagtctgtgtcaccttattggagcactttgatttcttttcatggatttggttatgaccgtgttagagatgactataagattattaggtgtcta |
4027531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 4027621 - 4027659
Alignment:
| Q |
395 |
ggagatttatagtctaagatgtaacacttggaaaaaact |
433 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
4027621 |
ggagatttatagtttaagatgtaacacttgggaaaaact |
4027659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 82 - 374
Target Start/End: Original strand, 34324657 - 34324952
Alignment:
| Q |
82 |
ttttgcatttactgtctagtcagagctttgaaaatagactaaaattggacttgccaactccactacaaacggagcaccctatgttttatattttgtattc |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| ||| || |||| ||||||||| | ||| |
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| T |
34324657 |
ttttgcatttactgtctagtcagagctttgagaatagacttaaattggacttgccaactccacttcaacaagaggacgctatcttttatattaggggttc |
34324756 |
T |
|
| Q |
182 |
tagcactattaacggaacactttgcctttccaaaggcgataaaa---catttgtattgtggaatccaacaacagatgaagtcaatgtcattcctcccagt |
278 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||| | ||| | | || ||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
34324757 |
tagcactaataacggaaccctttgtctttccaatgcagatgacagtacacttgtattgtggaatccaacaacagatgaaatcgttgtcattcctcccagt |
34324856 |
T |
|
| Q |
279 |
cctagggattctgtgtcacctgattgcagcgctatgatttcttttcatggatttggttataaccgtgttagagatgactatacgattattaagtgt |
374 |
Q |
| |
|
|||| ||| |||||||||||| |||| ||| || |||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||| |
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|
| T |
34324857 |
cctatggagtctgtgtcaccttattggagcactttgatttcttttcatggatttggttatgaccatgttagagatgactataagattattaggtgt |
34324952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 83 - 369
Target Start/End: Complemental strand, 29353200 - 29352911
Alignment:
| Q |
83 |
tttgcatttactgtctagtcagagctttgaaaatagactaaaattggacttgccaactccactacaaacggagcaccctatgttttatattttgtattct |
182 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||| |||| ||||| | ||||||||| | |||| |
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|
| T |
29353200 |
tttgcacttactgtctagtcggagctttgagaatagactcaaattggacttgccaactccacttcaacaggaggaccctgtcctttatatttggggttct |
29353101 |
T |
|
| Q |
183 |
agcactattaacggaacactttgcctttccaaaggcgataaaac---atttgtattgtggaatccaacaacagatgaagtcaatgtcattcctcccagtc |
279 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| || || | | | ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
29353100 |
agcactaataacggaaccctttgcctttccaatggaaatcatagtaaacttgtattgtagaatccaacaatagatgaagtcaatgtcattcctcccagtc |
29353001 |
T |
|
| Q |
280 |
ctagggattctgtgtcacctgattgcagcgctatgatttcttttcatggatttggttataaccgtgttagagatgactatacgattatta |
369 |
Q |
| |
|
| | ||| |||||||||||| |||| ||| || |||||| |||| |||||||||||||| || |||||||||||||||||| |||||||| |
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|
| T |
29353000 |
caatggagtctgtgtcaccttattggagctctttgatttgtttttatggatttggttatgactgtgttagagatgactataagattatta |
29352911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 433
Target Start/End: Complemental strand, 29352810 - 29352772
Alignment:
| Q |
395 |
ggagatttatagtctaagatgtaacacttggaaaaaact |
433 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
29352810 |
ggagatttatagtttaagatgtaacacttgggaaaaact |
29352772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 34325045 - 34325083
Alignment:
| Q |
395 |
ggagatttatagtctaagatgtaacacttggaaaaaact |
433 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
34325045 |
ggagatttatagtttaagatgtaacacttgggaaaaact |
34325083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 30651131 - 30651183
Alignment:
| Q |
322 |
ttcatggatttggttataaccgtgttagagatgactatacgattattaagtgt |
374 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
30651131 |
ttcatggatttggttatgaccatgttagagatgactataagattattaggtgt |
30651183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 31777477 - 31777529
Alignment:
| Q |
322 |
ttcatggatttggttataaccgtgttagagatgactatacgattattaagtgt |
374 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
31777477 |
ttcatggatttggttatgaccatgttagagatgactataagattattaggtgt |
31777529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 424
Target Start/End: Original strand, 13477593 - 13477622
Alignment:
| Q |
395 |
ggagatttatagtctaagatgtaacacttg |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
13477593 |
ggagatttatagtctaagatgtaacacttg |
13477622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 358
Target Start/End: Complemental strand, 17650 - 17614
Alignment:
| Q |
322 |
ttcatggatttggttataaccgtgttagagatgacta |
358 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
17650 |
ttcatggatttggttatgaccatgttagagatgacta |
17614 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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