View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6730_low_9 (Length: 411)
Name: NF6730_low_9
Description: NF6730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6730_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 190 - 390
Target Start/End: Original strand, 27227145 - 27227344
Alignment:
| Q |
190 |
atcaaataagtacggagtaataacttttgaaaagtaaacggataatttattaaaaatgttgaattttttgtcaatttaaaaagttgactttaatgaagtc |
289 |
Q |
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| T |
27227145 |
atcaaataagtacggagtcataacatt-gaaaagtaaacggataatttattaaaaatgttgacttttttgtcaatttataaagttgagtttaatgaagtc |
27227243 |
T |
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| Q |
290 |
acttctcatagcccagcagaagaaacgatggcgccgccgtcctccaaggaagcaagaggaagtgtgacgagtctctgatgagagaagtcgattcaacggt |
389 |
Q |
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| T |
27227244 |
acttctcatagcccagcagaagaaacgatggcgccgctatcctgcaacgaagcaagaggaagtgtgatgagtctctgatgagagaagtcgattcaacggt |
27227343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 26992284 - 26992337
Alignment:
| Q |
34 |
gaagatgcgttagttttcttgatgaatgagtgaatttgaaaattaaattttatt |
87 |
Q |
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| T |
26992284 |
gaagaggcgttagttttctggatgaatatgtgaatttgaaaattaaattttatt |
26992337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 35979965 - 35980032
Alignment:
| Q |
63 |
gtgaatttgaaaattaaattttatttgaaga-tagttttattattttaggatgtaaccgtaaatacata |
130 |
Q |
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| T |
35979965 |
gtgaatatgaaaattaaattttattt-aagagtaattttgtcattttaggatgtaaccataaatacata |
35980032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 44953109 - 44953023
Alignment:
| Q |
63 |
gtgaatttgaaaattaaattttatttgaagatagttttattattttaggatgtaaccgtaaatacataaagtgtaattagaaaaattc |
150 |
Q |
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| T |
44953109 |
gtgaatttaaaaattaaatttcatttaaagataattt-atcattttaaggtgtaaccatgaatacatagggtgtgattagaaaaattc |
44953023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 23482747 - 23482671
Alignment:
| Q |
73 |
aaattaaattttatttgaagatagttttattattttaggatgtaaccgtaaatacataaagtgtaattagaaaaatt |
149 |
Q |
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| T |
23482747 |
aaattaaattttatttaaggataattttatcattttagtgtgtaaccatgaatacatgaaatgtaattagaaaaatt |
23482671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 45237102 - 45237147
Alignment:
| Q |
64 |
tgaatttgaaaattaaattttatttgaagatagttttattatttta |
109 |
Q |
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| T |
45237102 |
tgaatttgaaaattaaattttatttaaagataattttatcatttta |
45237147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 35005895 - 35005789
Alignment:
| Q |
44 |
tagttttcttgatgaatgagtgaatttgaaaattaaattttatttgaagatagttttattattttaggatgtaaccgtaaatacataaagtgtaattaga |
143 |
Q |
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| T |
35005895 |
tagttttctgggtgaatgggtgaatttgaaaattatattttatttaaaggtaaatttgtgattttagggtgtaatcagaaatatat-gagtgtaattaga |
35005797 |
T |
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| Q |
144 |
aaaattct |
151 |
Q |
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| T |
35005796 |
caaattct |
35005789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 43653563 - 43653647
Alignment:
| Q |
63 |
gtgaatttgaaaattaaattttatttgaagatagttttattattttaggatgtaaccgtaaatacataaagtgtaattagaaaaa |
147 |
Q |
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|||||||||||||| | |||||||| |||||| |||| |||||||||||| |||| || || |||| |||||| |||||||| |
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| T |
43653563 |
gtgaatttgaaaataattttttatttaaagataattttgttattttaggatataacaaaaattaaataaggtgtaactagaaaaa |
43653647 |
T |
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