View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6731_high_3 (Length: 482)
Name: NF6731_high_3
Description: NF6731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6731_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 27119518 - 27119214
Alignment:
| Q |
13 |
agaacctgtggccttaaactttccctgccttcttttaccatcaacagggttaagagcagctgcaacaaccttaataagaacctgatcttccttaacatca |
112 |
Q |
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| T |
27119518 |
agaatctgtagccttaaactttccctgccttcttttaccatcaacagggttaagagcagctgcaacaactttaacaagaacctgatcttccttaacatca |
27119419 |
T |
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| Q |
113 |
ggtacagcaacattggagtcaaatttcaaaacatcaacacctccatattctccatacacccaagccttcatttcagaaggaacttgtgtcactttcacag |
212 |
Q |
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| T |
27119418 |
ggtacagcaacattggagtcaaatttcaaaacatcaacacctccatattctccatacacccaagccttcatttcagaaggaacttgtgtcactttcacag |
27119319 |
T |
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| Q |
213 |
cctcagatgaagcagtagtagattgagacttcaccaagaatctagcatgccttgttgaagaagacaagagagttttgagacaagttttttggttagtttt |
312 |
Q |
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| T |
27119318 |
cctcagatgaagcagtagtagattgagacttcaccaagaatctagcatgccttgttgaagaagacaagagagttttgagacaagttttttggttagtttt |
27119219 |
T |
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| Q |
313 |
tggtt |
317 |
Q |
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||||| |
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| T |
27119218 |
tggtt |
27119214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 406 - 465
Target Start/End: Complemental strand, 27119125 - 27119066
Alignment:
| Q |
406 |
cattgtttctgatgttgccttatcagttgtttctgtttctgtttctgttttagtttcaac |
465 |
Q |
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| T |
27119125 |
cattgtttctgatgttgccttatcagttgcagttgtttctgtttctgttttagtttcaac |
27119066 |
T |
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