View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6731_low_10 (Length: 223)

Name: NF6731_low_10
Description: NF6731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6731_low_10
NF6731_low_10
[»] chr3 (3 HSPs)
chr3 (1-216)||(11015449-11015664)
chr3 (5-214)||(11024465-11024674)
chr3 (5-204)||(11005890-11006089)
[»] chr4 (22 HSPs)
chr4 (109-152)||(48735423-48735466)
chr4 (9-70)||(49044140-49044201)
chr4 (9-69)||(48852734-48852794)
chr4 (89-179)||(48891385-48891472)
chr4 (109-152)||(48147758-48147801)
chr4 (93-151)||(7877727-7877785)
chr4 (98-152)||(48170592-48170646)
chr4 (106-152)||(48902929-48902975)
chr4 (9-58)||(7877807-7877856)
chr4 (9-58)||(7908398-7908447)
chr4 (8-49)||(48705329-48705370)
chr4 (8-49)||(48735352-48735393)
chr4 (93-149)||(7908325-7908381)
chr4 (112-159)||(48156465-48156512)
chr4 (109-151)||(7237764-7237806)
chr4 (109-151)||(7771396-7771438)
chr4 (109-151)||(7773858-7773900)
chr4 (109-151)||(7790081-7790123)
chr4 (9-54)||(7773776-7773821)
chr4 (109-154)||(48875841-48875886)
chr4 (19-59)||(45366187-45366227)
chr4 (20-60)||(45372033-45372073)
[»] chr8 (1 HSPs)
chr8 (13-69)||(4031858-4031914)
[»] chr5 (1 HSPs)
chr5 (9-56)||(179112-179159)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 11015449 - 11015664
Alignment:
Q  1 ccaggacactcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtgaagaaatattatcttctactgggtctatacttgtattatagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11015449 ccaggacactcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtgaagaaatattatcgtctactgggtctatacttgtattatagg 11015548  T
Q  101 acacggataccaccaagtaatcatctcttaaatggtcatacccaaaaccatacagacaacatgaatatttggcatctaaattggaagcaggaaaaggtat 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11015549 acactgataccaccaagtaatcatctcttaaatggtcatacccaaaaccatacagacaacatgaatatttggcatctaaattggaagcaggaaaaggtat 11015648  T
Q  201 ttgtttgtgatgtcca 216  Q
    ||||||||||||||||    
T  11015649 ttgtttgtgatgtcca 11015664  T

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Target: chr3; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 5 - 214
Target Start/End: Original strand, 11024465 - 11024674
Alignment:
Q  5 gacactcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtgaagaaatattatcttctactgggtctatacttgtattataggacac 104  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| | | ||||||||||  ||| |||||||||    
T  11024465 gacactcaatttcgttccatgtattagctctcaaagagaaaaacttcaaatgtgatgaaatattttcttcaattaggtctatactcttatcataggacac 11024564  T
Q  105 ggataccaccaagtaatcatctcttaaatggtcatacccaaaaccatacagacaacatgaatatttggcatctaaattggaagcaggaaaaggtatttgt 204  Q
     |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||      
T  11024565 tgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatgaatatttggcatctaaattggaaggaggaaatggtattttc 11024664  T
Q  205 ttgtgatgtc 214  Q
    ||||||||||    
T  11024665 ttgtgatgtc 11024674  T

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Target: chr3; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 5 - 204
Target Start/End: Original strand, 11005890 - 11006089
Alignment:
Q  5 gacactcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtgaagaaatattatcttctactgggtctatacttgtattataggacac 104  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| | |||||||| |||| ||| |||||||||    
T  11005890 gacactcaatttctttccatgtattcgctctcaatgagaaaaacttcaaacgtgatgaaatattatcttcaattgggtctacacttttatcataggacac 11005989  T
Q  105 ggataccaccaagtaatcatctcttaaatggtcatacccaaaaccatacagacaacatgaatatttggcatctaaattggaagcaggaaaaggtatttgt 204  Q
     |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||  |||||| |||||||||||||||| ||||||||||||||||    
T  11005990 tgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatacatattttgcatctaaattggaaggaggaaaaggtatttgt 11006089  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 48735423 - 48735466
Alignment:
Q  109 accaccaagtaatcatctcttaaatggtcatacccaaaaccata 152  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  48735423 accaccaagtaatcatctgttaaatggtcatacccaaaaccata 48735466  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 49044140 - 49044201
Alignment:
Q  9 ctcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtgaagaaatattat 70  Q
    ||||||||| |||||| ||||| |||||||||||||||||| ||||||| | ||||||||||    
T  49044140 ctcaatttcattccatctattatctctcaatgagaaaaactccaaatgtaatgaaatattat 49044201  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 48852794 - 48852734
Alignment:
Q  9 ctcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtgaagaaatatta 69  Q
    ||||||||| ||||||| |||||||||||||||||||||||  |||||||| |||| ||||    
T  48852794 ctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacatta 48852734  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 48891472 - 48891385
Alignment:
Q  89 ttgtattataggacacggataccaccaagtaatcatctcttaaatggtcatacccaaaaccatacagacaacatgaatatttggcatctaa 179  Q
    |||||| ||||||||| || |||||||| ||||||||||||||    ||||||| ||||||||| ||| ||||| |||| |||||||||||    
T  48891472 ttgtatcataggacactgaaaccaccaactaatcatctcttaa---ctcatacctaaaaccatatagataacataaatagttggcatctaa 48891385  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 48147758 - 48147801
Alignment:
Q  109 accaccaagtaatcatctcttaaatggtcatacccaaaaccata 152  Q
    |||||||||||||||||| |||| ||||||||||||||||||||    
T  48147758 accaccaagtaatcatctgttaactggtcatacccaaaaccata 48147801  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 7877785 - 7877727
Alignment:
Q  93 attataggacacggataccaccaagtaatcatctcttaaatggtcatacccaaaaccat 151  Q
    |||||||||||  || ||||||||||||||||||||| | |||||||| ||||||||||    
T  7877785 attataggacaatgaaaccaccaagtaatcatctcttgattggtcataaccaaaaccat 7877727  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 48170592 - 48170646
Alignment:
Q  98 aggacacggataccaccaagtaatcatctcttaaatggtcatacccaaaaccata 152  Q
    ||||||| || ||||| ||||||||||||||||| || |||||||||||||||||    
T  48170592 aggacactgaaaccactaagtaatcatctcttaactgatcatacccaaaaccata 48170646  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 48902975 - 48902929
Alignment:
Q  106 gataccaccaagtaatcatctcttaaatggtcatacccaaaaccata 152  Q
    ||||||| |||||||||||||||| | ||||||||||||||||||||    
T  48902975 gataccatcaagtaatcatctcttgagtggtcatacccaaaaccata 48902929  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 7877856 - 7877807
Alignment:
Q  9 ctcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtg 58  Q
    |||| |||| |||||||||||| |||| ||||||||||||||||||||||    
T  7877856 ctcagtttctttccatgtattatctctaaatgagaaaaacttcaaatgtg 7877807  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 7908447 - 7908398
Alignment:
Q  9 ctcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtg 58  Q
    ||||||||| |||||||||||| |||| | ||||||||||||||||||||    
T  7908447 ctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtg 7908398  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 48705329 - 48705370
Alignment:
Q  8 actcaatttcgttccatgtattagctctcaatgagaaaaact 49  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  48705329 actcaatttctttccatgtattaactctcaatgagaaaaact 48705370  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 48735352 - 48735393
Alignment:
Q  8 actcaatttcgttccatgtattagctctcaatgagaaaaact 49  Q
    |||||||||| ||||| |||||||||||||||||||||||||    
T  48735352 actcaatttctttccaggtattagctctcaatgagaaaaact 48735393  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 7908381 - 7908325
Alignment:
Q  93 attataggacacggataccaccaagtaatcatctcttaaatggtcatacccaaaacc 149  Q
    |||||||||||  || ||||||||||||||||||||| | |||||||| ||||||||    
T  7908381 attataggacaatgaaaccaccaagtaatcatctcttgactggtcataaccaaaacc 7908325  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 48156465 - 48156512
Alignment:
Q  112 accaagtaatcatctcttaaatggtcatacccaaaaccatacagacaa 159  Q
    |||||||||||||||||||| || ||||||||||| ||||| ||||||    
T  48156465 accaagtaatcatctcttaattgatcatacccaaatccatatagacaa 48156512  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 7237764 - 7237806
Alignment:
Q  109 accaccaagtaatcatctcttaaatggtcatacccaaaaccat 151  Q
    ||||||||||||||||||||| | |||||||| ||||||||||    
T  7237764 accaccaagtaatcatctcttgactggtcataaccaaaaccat 7237806  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 7771438 - 7771396
Alignment:
Q  109 accaccaagtaatcatctcttaaatggtcatacccaaaaccat 151  Q
    ||||||||||||||||||||| | |||||||| ||||||||||    
T  7771438 accaccaagtaatcatctcttgactggtcataaccaaaaccat 7771396  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 7773858 - 7773900
Alignment:
Q  109 accaccaagtaatcatctcttaaatggtcatacccaaaaccat 151  Q
    ||||||||||||||||||||||  |||||||| ||||||||||    
T  7773858 accaccaagtaatcatctcttacctggtcataaccaaaaccat 7773900  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 7790123 - 7790081
Alignment:
Q  109 accaccaagtaatcatctcttaaatggtcatacccaaaaccat 151  Q
    ||||||||||||||||||||| | |||||||| ||||||||||    
T  7790123 accaccaagtaatcatctcttgactggtcataaccaaaaccat 7790081  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 7773776 - 7773821
Alignment:
Q  9 ctcaatttcgttccatgtattagctctcaatgagaaaaacttcaaa 54  Q
    |||| |||| |||||||||||| |||| ||||||||||||||||||    
T  7773776 ctcagtttctttccatgtattatctctaaatgagaaaaacttcaaa 7773821  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 48875886 - 48875841
Alignment:
Q  109 accaccaagtaatcatctcttaaatggtcatacccaaaaccataca 154  Q
    ||||||||||||||||||  ||| || |||||||||||||||||||    
T  48875886 accaccaagtaatcatctgctaactgatcatacccaaaaccataca 48875841  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 45366187 - 45366227
Alignment:
Q  19 ttccatgtattagctctcaatgagaaaaacttcaaatgtga 59  Q
    |||||||||||||||||||||||||||| || ||| |||||    
T  45366187 ttccatgtattagctctcaatgagaaaatctccaagtgtga 45366227  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 45372033 - 45372073
Alignment:
Q  20 tccatgtattagctctcaatgagaaaaacttcaaatgtgaa 60  Q
    |||| |||||| |||||||||||||||||| ||||||||||    
T  45372033 tccaagtattatctctcaatgagaaaaactccaaatgtgaa 45372073  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 4031858 - 4031914
Alignment:
Q  13 atttcgttccatgtattagctctcaatgagaaaaacttcaaatgtgaagaaatatta 69  Q
    ||||| |||||||| || ||||||| ||||||||||| ||||||||| |||||||||    
T  4031858 atttctttccatgtgttggctctcagtgagaaaaactccaaatgtgatgaaatatta 4031914  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 179159 - 179112
Alignment:
Q  9 ctcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatg 56  Q
    ||||||||| |||||||||||| ||||||||||||||| || ||||||    
T  179159 ctcaatttctttccatgtattatctctcaatgagaaaatctccaaatg 179112  T

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