View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6731_low_3 (Length: 809)

Name: NF6731_low_3
Description: NF6731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6731_low_3
NF6731_low_3
[»] chr8 (13 HSPs)
chr8 (1-251)||(29722216-29722466)
chr8 (420-512)||(39432332-39432426)
chr8 (391-514)||(220338-220462)
chr8 (391-514)||(689493-689617)
chr8 (391-514)||(733961-734085)
chr8 (391-514)||(857857-857981)
chr8 (45-127)||(13638296-13638378)
chr8 (45-127)||(13738709-13738791)
chr8 (465-514)||(7345423-7345472)
chr8 (391-514)||(16808335-16808461)
chr8 (401-509)||(14011024-14011133)
chr8 (398-512)||(25470829-25470944)
chr8 (88-127)||(38896172-38896211)
[»] chr6 (20 HSPs)
chr6 (1-251)||(32362635-32362885)
chr6 (17-159)||(17720409-17720551)
chr6 (1-97)||(15102214-15102310)
chr6 (402-521)||(22730688-22730809)
chr6 (391-512)||(9031763-9031886)
chr6 (22-225)||(29520529-29520732)
chr6 (391-508)||(4844144-4844262)
chr6 (419-512)||(24256913-24257008)
chr6 (419-508)||(32540954-32541045)
chr6 (22-129)||(17252441-17252547)
chr6 (391-512)||(26669635-26669757)
chr6 (398-510)||(3029965-3030079)
chr6 (465-511)||(30668235-30668281)
chr6 (65-111)||(34117544-34117590)
chr6 (65-118)||(34144553-34144606)
chr6 (65-118)||(34157169-34157222)
chr6 (431-512)||(25064684-25064767)
chr6 (421-508)||(30833018-30833107)
chr6 (430-512)||(19135926-19136010)
chr6 (391-444)||(34571444-34571497)
[»] chr7 (16 HSPs)
chr7 (1-251)||(38076705-38076955)
chr7 (2-251)||(14746722-14746971)
chr7 (402-518)||(35498389-35498505)
chr7 (465-514)||(7465461-7465510)
chr7 (391-512)||(27726345-27726467)
chr7 (391-512)||(43635585-43635707)
chr7 (391-511)||(32814825-32814946)
chr7 (401-509)||(44409201-44409309)
chr7 (392-495)||(32309125-32309229)
chr7 (468-512)||(32514690-32514734)
chr7 (432-512)||(45267942-45268024)
chr7 (480-514)||(14772401-14772435)
chr7 (480-514)||(15222853-15222887)
chr7 (419-498)||(19924778-19924859)
chr7 (391-513)||(11808034-11808158)
chr7 (402-508)||(43712300-43712407)
[»] chr3 (20 HSPs)
chr3 (1-251)||(38356012-38356262)
chr3 (1-251)||(52194930-52195180)
chr3 (1-251)||(55366180-55366430)
chr3 (1-238)||(1660393-1660628)
chr3 (1-183)||(53272610-53272791)
chr3 (391-507)||(33533205-33533322)
chr3 (22-129)||(36624258-36624365)
chr3 (421-509)||(31108765-31108855)
chr3 (422-498)||(34407096-34407174)
chr3 (465-511)||(28951864-28951910)
chr3 (469-514)||(16985015-16985060)
chr3 (469-510)||(19149423-19149464)
chr3 (23-135)||(18380647-18380759)
chr3 (465-512)||(38555078-38555126)
chr3 (465-512)||(6951841-6951888)
chr3 (391-510)||(24160504-24160624)
chr3 (419-498)||(51017801-51017881)
chr3 (473-510)||(6284876-6284913)
chr3 (65-118)||(10349662-10349715)
chr3 (392-514)||(49299217-49299339)
[»] chr4 (18 HSPs)
chr4 (1-251)||(28732191-28732441)
chr4 (22-142)||(8081674-8081794)
chr4 (401-512)||(49039431-49039543)
chr4 (430-512)||(15640457-15640542)
chr4 (402-513)||(34684564-34684674)
chr4 (392-460)||(39293579-39293647)
chr4 (401-510)||(49319392-49319503)
chr4 (391-512)||(54854155-54854277)
chr4 (22-129)||(56337943-56338050)
chr4 (401-498)||(21023338-21023435)
chr4 (451-512)||(9062173-9062236)
chr4 (421-513)||(18740921-18741016)
chr4 (429-486)||(44272959-44273018)
chr4 (465-512)||(41492549-41492596)
chr4 (402-478)||(47416499-47416576)
chr4 (465-510)||(4419737-4419782)
chr4 (465-514)||(27921891-27921940)
chr4 (466-511)||(53335306-53335351)
[»] chr2 (21 HSPs)
chr2 (1-251)||(3704297-3704546)
chr2 (1-251)||(856085-856335)
chr2 (1-251)||(34832885-34833135)
chr2 (22-127)||(39072726-39072831)
chr2 (391-514)||(39334857-39334981)
chr2 (391-512)||(34107271-34107393)
chr2 (401-498)||(44132548-44132647)
chr2 (398-510)||(1244568-1244681)
chr2 (391-512)||(20942085-20942204)
chr2 (420-513)||(32288372-32288467)
chr2 (391-510)||(38581582-38581701)
chr2 (409-514)||(38807876-38807983)
chr2 (408-511)||(2057479-2057581)
chr2 (465-511)||(917342-917388)
chr2 (430-513)||(3179320-3179405)
chr2 (430-512)||(21970453-21970538)
chr2 (659-701)||(26545908-26545950)
chr2 (465-511)||(34376540-34376586)
chr2 (470-511)||(22014713-22014754)
chr2 (430-511)||(44187701-44187785)
chr2 (402-512)||(44487754-44487865)
[»] chr5 (11 HSPs)
chr5 (256-740)||(24652904-24653402)
chr5 (256-382)||(24651274-24651402)
chr5 (739-802)||(24652116-24652179)
chr5 (401-512)||(3535922-3536034)
chr5 (392-437)||(41181816-41181861)
chr5 (430-514)||(6447494-6447581)
chr5 (391-494)||(8934797-8934900)
chr5 (465-512)||(5932069-5932116)
chr5 (400-459)||(6291047-6291105)
chr5 (64-211)||(29488616-29488763)
chr5 (401-512)||(40250163-40250275)
[»] chr1 (20 HSPs)
chr1 (402-512)||(41998095-41998205)
chr1 (398-512)||(18179325-18179440)
chr1 (391-512)||(9931084-9931206)
chr1 (402-518)||(37262093-37262209)
chr1 (16-94)||(26701186-26701264)
chr1 (398-512)||(2643798-2643913)
chr1 (402-508)||(9769567-9769674)
chr1 (391-512)||(9410304-9410425)
chr1 (421-509)||(43020611-43020701)
chr1 (421-512)||(9768814-9768907)
chr1 (391-509)||(13941319-13941438)
chr1 (402-498)||(195055-195152)
chr1 (402-498)||(5684133-5684230)
chr1 (451-509)||(8758404-8758463)
chr1 (400-512)||(42908768-42908881)
chr1 (401-512)||(7906312-7906424)
chr1 (466-508)||(28417330-28417372)
chr1 (401-512)||(41677057-41677169)
chr1 (465-511)||(46670895-46670941)
chr1 (466-512)||(51917554-51917600)
[»] scaffold0119 (1 HSPs)
scaffold0119 (391-512)||(1036-1158)
[»] scaffold0045 (1 HSPs)
scaffold0045 (402-497)||(30885-30983)
[»] scaffold0057 (1 HSPs)
scaffold0057 (22-127)||(3380-3485)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-117; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 29722466 - 29722216
Alignment:
Q  1 taattacaaaaataagttagccgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatcca 100  Q
    |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  29722466 taattacaaaaataagttagtcgatacccaaacaaagtaacgggtccgaccaccatctactcgtgccataaacaaagttggcattgttagctttcagcca 29722367  T
Q  101 ccacaaagaatgatacttaaccttttctacaagatctatcatagtaagttgtgtattattgaaaattctattatttctttcgtgtcaaacaatccataca 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  29722366 ccacaaagaattatacttaaccttttctacaagatctatcatagtaagttgtgtattattgaaaattatattatttctttcgtgccaaacaatccataca 29722267  T
Q  201 cacaagagccaaagcatttgcatgattgtccggcgcttcgtcgacccacca 251  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29722266 cacaagagccaaaacatttgcatgattgtccggcgcttcgtcgacccacca 29722216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 420 - 512
Target Start/End: Original strand, 39432332 - 39432426
Alignment:
Q  420 ttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaactgaattatgctcacggg 512  Q
    ||||||||| ||||||||| ||||| |||||||||||||| ||||  ||||||||||| |  ||||||| |||||||||||  ||||||||||||    
T  39432332 ttttttcaaagtgaataagtggggtgtctgaggttcgaaccccaacccctgcatataacattgcatgtccctgccaactgagctatgctcacggg 39432426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 391 - 514
Target Start/End: Original strand, 220338 - 220462
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctc 488  Q
    |||||| ||||||||||||||||||| || |||||||| ||||||||| ||||| || | | ||||||| |  ||  |||||||||| |  ||||||| |    
T  220338 gtcaagtagtctagtggttagaattcacc-tttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccc 220436  T
Q  489 tgccaactgaattatgctcacgggaa 514  Q
    ||||||||||  ||||||||||||||    
T  220437 tgccaactgagctatgctcacgggaa 220462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 391 - 514
Target Start/End: Original strand, 689493 - 689617
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctc 488  Q
    |||||| ||||||||||||||||||| || |||||||| ||||||||| ||||| || | | ||||||| |  ||  |||||||||| |  ||||||| |    
T  689493 gtcaagtagtctagtggttagaattcacc-tttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccc 689591  T
Q  489 tgccaactgaattatgctcacgggaa 514  Q
    ||||||||||  ||||||||||||||    
T  689592 tgccaactgagctatgctcacgggaa 689617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 391 - 514
Target Start/End: Original strand, 733961 - 734085
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctc 488  Q
    |||||| ||||||||||||||||||| || |||||||| ||||||||| ||||| || | | ||||||| |  ||  |||||||||| |  ||||||| |    
T  733961 gtcaagtagtctagtggttagaattcacc-tttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccc 734059  T
Q  489 tgccaactgaattatgctcacgggaa 514  Q
    ||||||||||  ||||||||||||||    
T  734060 tgccaactgagctatgctcacgggaa 734085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 391 - 514
Target Start/End: Original strand, 857857 - 857981
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctc 488  Q
    |||||| ||||||||||||||||||| || |||||||| ||||||||| ||||| || | | ||||||| |  ||  |||||||||| |  ||||||| |    
T  857857 gtcaagtagtctagtggttagaattcacc-tttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccc 857955  T
Q  489 tgccaactgaattatgctcacgggaa 514  Q
    ||||||||||  ||||||||||||||    
T  857956 tgccaactgagctatgctcacgggaa 857981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 13638296 - 13638378
Alignment:
Q  45 tccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatccaccacaaagaatgatacttaaccttttc 127  Q
    ||||||||||||||| | |||||||||||||| ||||||||||| | ||||| |||||| || |||| || ||| ||||||||    
T  13638296 tccgaccaccatctaatcgtgccataaacaaacttggcattgttcgttttcagccaccaaaaggaattatgcttgaccttttc 13638378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 13738709 - 13738791
Alignment:
Q  45 tccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatccaccacaaagaatgatacttaaccttttc 127  Q
    ||||||||||||||| | |||||||||||||| ||||||||||| | ||||| |||||| || |||| || ||| ||||||||    
T  13738709 tccgaccaccatctaatcgtgccataaacaaacttggcattgttcgttttcagccaccaaaaggaattatgcttgaccttttc 13738791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 465 - 514
Target Start/End: Complemental strand, 7345472 - 7345423
Alignment:
Q  465 cctgcatataataaggcatgtctctgccaactgaattatgctcacgggaa 514  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  7345472 cctgcatataataatgcatgtccctgccaactgagttatgctcacgggaa 7345423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 514
Target Start/End: Original strand, 16808335 - 16808461
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa---cctgcatataataaggcatgtct 487  Q
    |||||| || |||||||||||||||| | |||||| || ||||||||| ||| | | || ||||||||| ||     |||||||||||||| |||||||     
T  16808335 gtcaagcagcctagtggttagaattcacttttttttaaggtgaataagtgggctgtatggggttcgaaccccccacccctgcatataataatgcatgtcc 16808434  T
Q  488 ctgccaactgaattatgctcacgggaa 514  Q
    |||| |||||| ||||||||| |||||    
T  16808435 ctgctaactgagttatgctcatgggaa 16808461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 401 - 509
Target Start/End: Original strand, 14011024 - 14011133
Alignment:
Q  401 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactga 498  Q
    |||||||||||||||| | |||||| ||  |||||||| ||| | || ||||||||||||||  ||  ||||||||| || ||||||| |||||||||||    
T  14011024 ctagtggttagaattcacatttttt-aagatgaataagtgggatgtccgaggttcgaactccggcccctgcatataacaatgcatgtccctgccaactga 14011122  T
Q  499 attatgctcac 509  Q
    | |||||||||    
T  14011123 actatgctcac 14011133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 512
Target Start/End: Original strand, 25470829 - 25470944
Alignment:
Q  398 agtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaac 495  Q
    |||||||||| |||||||| |||| || ||| ||||||||  ||||| || ||||||||||| || |||  || ||||||||| ||||||  ||| ||||    
T  25470829 agtctagtggctagaattcaccttctt-caaggtgaataaatggggtgtccgaggttcgaaccccgacccatgaatataataatgcatgttcctgtcaac 25470927  T
Q  496 tgaattatgctcacggg 512  Q
    ||| |||||||||||||    
T  25470928 tgagttatgctcacggg 25470944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 38896211 - 38896172
Alignment:
Q  88 tagctttcatccaccacaaagaatgatacttaaccttttc 127  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  38896211 tagctttcatccaccacaaagaatgatactttactttttc 38896172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 32362635 - 32362885
Alignment:
Q  1 taattacaaaaataagttagccgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatcca 100  Q
    |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  32362635 taattacaaaaataagttagtcgatacccaaacaaagtaacgggtccgaccaccatctactcgtgccataaacaaagttggcattgttagctttcaacca 32362734  T
Q  101 ccacaaagaatgatacttaaccttttctacaagatctatcatagtaagttgtgtattattgaaaattctattatttctttcgtgtcaaacaatccataca 200  Q
    |||||| |||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32362735 ccacaatgaattatacttaaccttttctacaagatctatcataacaagttgtgtattattgaaaattctattatttctttcgtgccaaacaatccataca 32362834  T
Q  201 cacaagagccaaagcatttgcatgattgtccggcgcttcgtcgacccacca 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32362835 cacaagagccaaagcatttgcatgattgtccggcgcttcgtcgacccacca 32362885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 17720409 - 17720551
Alignment:
Q  17 ttagccgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatccaccacaaagaatgatac 116  Q
    |||| ||||||||||||||| |||| | ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17720409 ttagtcgatacccaaacaaattaacgggtccgaccaccatctactcgtgccataaacaaagttggcatggttagctttcatccaccacaaagaatgatac 17720508  T
Q  117 ttaaccttttctacaagatctatcatagtaagttgtgtattat 159  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  17720509 ttaaccttttctacaagatctatcatagtaaggtgagtattat 17720551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 15102310 - 15102214
Alignment:
Q  1 taattacaaaaataagttagccgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcat 97  Q
    |||||||||||| || |||| ||||||||||| |||||||| | ||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  15102310 taattacaaaaacaaattagtcgatacccaaataaagtaacgggtccgaccaccatctactcgtgccataaataaagttggcattgttagctttcat 15102214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 402 - 521
Target Start/End: Original strand, 22730688 - 22730809
Alignment:
Q  402 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaactgaa 499  Q
    |||||| |||||||| |||| ||| || ||||||||| ||||| || |||||||||||| ||   ||||||||||| || |||||||||||||||||||     
T  22730688 tagtggctagaattcaccttattttaaggtgaataagtggggtgtccgaggttcgaacttcagtccctgcatataacaatgcatgtctctgccaactgag 22730787  T
Q  500 ttatgctcacgggaaaaaacaa 521  Q
    ||||||||||||| | ||||||    
T  22730788 ttatgctcacggggacaaacaa 22730809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 391 - 512
Target Start/End: Complemental strand, 9031886 - 9031763
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctc 488  Q
    |||||| ||||||||||||||||||| ||||||||  |  |||||||| ||||| |||||||||| |||| |||  ||||||||||| || ||||||| |    
T  9031886 gtcaagtagtctagtggttagaattcaccttttttttaaatgaataagtggggtgtctgaggttcaaacttcaagccctgcatataacaatgcatgtccc 9031787  T
Q  489 tgccaactgaattatgctcacggg 512  Q
    ||||||||||  |||| |||||||    
T  9031786 tgccaactgagctatgttcacggg 9031763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 29520529 - 29520732
Alignment:
Q  22 cgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatccaccacaaagaatgatacttaac 121  Q
    |||||||  ||||||||||| | | |||||||||||||    || |||||||||| ||||||||||| ||||||| |||||| || || | ||| |||||    
T  29520529 cgataccacaacaaagtaacagattcgaccaccatctatgattgtcataaacaaaattggcattgtttgctttcagccaccaaaatgagttatatttaac 29520628  T
Q  122 cttttctacaagatctatcatagtaagttgtgtattattgaaaattctattatttctttcgtgtcaaacaatccatacacacaagagccaaagcatttgc 221  Q
    |||||||| ||| |||||||| |||  |||  |||| ||||| ||| | || |||| ||| |  ||||| ||||  ||||||||||||||||| | ||||    
T  29520629 cttttctaaaagttctatcatggtagtttgaatattcttgaatattttgttgtttcgttcattccaaactatccgcacacacaagagccaaagaagttgc 29520728  T
Q  222 atga 225  Q
    ||||    
T  29520729 atga 29520732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 391 - 508
Target Start/End: Complemental strand, 4844262 - 4844144
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 488  Q
    |||||| ||||||||||||||||||| | ||||||||| ||||||||| | ||| |||||||||  ||| || |||  ||||||||| || ||||||| |    
T  4844262 gtcaagtagtctagtggttagaattcac-ttttttcaaggtgaataagtgaggtgtctgaggtttaaaccccgacccctgcatataacaatgcatgtccc 4844164  T
Q  489 tgccaactgaattatgctca 508  Q
    |||||||||| |||| ||||    
T  4844163 tgccaactgagttatactca 4844144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 419 - 512
Target Start/End: Complemental strand, 24257008 - 24256913
Alignment:
Q  419 cttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcacggg 512  Q
    |||||||||| ||||||||| |||||||| | |||||||||  |  ||  |||||||||||| |||||||||| |||||||| |||||||||||||    
T  24257008 cttttttcaaggtgaataagtggggtatccggggttcgaacctcggcccctgcatataataatgcatgtctctaccaactgacttatgctcacggg 24256913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 419 - 508
Target Start/End: Original strand, 32540954 - 32541045
Alignment:
Q  419 cttttttcaatgtgaataagcggggtatctgaggttcgaactccaacctgcatata--ataaggcatgtctctgccaactgaattatgctca 508  Q
    ||||||| || ||||||||| ||||||||||  ||||||||||| ||||  |||||  |||| |||||||||||||||||||| ||||||||    
T  32540954 ctttttttaaggtgaataagtggggtatctggagttcgaactccgacctctatatataataatgcatgtctctgccaactgaactatgctca 32541045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 17252547 - 17252441
Alignment:
Q  22 cgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatccaccacaaagaatgatacttaac 121  Q
    |||||||||||||||||||| | |||||||||||  || |  || ||||||||||||||||||||| |||||| | |||||| | ||| || || |||||    
T  17252547 cgatacccaaacaaagtaacaggtccgaccaccagtta-tgatgtcataaacaaagttggcattgtgagctttaagccaccaaagagattggtatttaac 17252449  T
Q  122 cttttcta 129  Q
    ||||||||    
T  17252448 cttttcta 17252441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 512
Target Start/End: Original strand, 26669635 - 26669757
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 488  Q
    |||||| ||| |||||| |||||||| ||||||| ||| ||||||||| ||||| |||| ||||||||| ||| ||  | |||||||| | ||||||| |    
T  26669635 gtcaagtagtttagtggctagaattcaccttttt-caaggtgaataagtggggtgtctggggttcgaaccccagcccctacatataattatgcatgtccc 26669733  T
Q  489 tgccaactgaattatgctcacggg 512  Q
    | ||||||||  ||||||||||||    
T  26669734 taccaactgagctatgctcacggg 26669757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 398 - 510
Target Start/End: Complemental strand, 3030079 - 3029965
Alignment:
Q  398 agtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctctgccaac 495  Q
    |||| |||||||||||||| | |||||| || ||||||||| ||||| ||   |||||||||||||||  || ||||||||||   ||||| ||||||||    
T  3030079 agtccagtggttagaattcacatttttttaaggtgaataagtggggtgtccagggttcgaactccaaccactacatataataatttatgtccctgccaac 3029980  T
Q  496 tgaattatgctcacg 510  Q
    | | |||||||||||    
T  3029979 taagttatgctcacg 3029965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 465 - 511
Target Start/End: Original strand, 30668235 - 30668281
Alignment:
Q  465 cctgcatataataaggcatgtctctgccaactgaattatgctcacgg 511  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||||    
T  30668235 cctgcatataataatgcatgtctatgccaactgagttatgctcacgg 30668281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 34117590 - 34117544
Alignment:
Q  65 gccataaacaaagttggcattgttagctttcatccaccacaaagaat 111  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||||    
T  34117590 gccataaacaaagttggcattgttggctttcagccaccaaaaagaat 34117544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 34144606 - 34144553
Alignment:
Q  65 gccataaacaaagttggcattgttagctttcatccaccacaaagaatgatactt 118  Q
    |||||||||||||||||||||||| ||||||| | |||| ||||||| ||||||    
T  34144606 gccataaacaaagttggcattgttggctttcagctaccaaaaagaattatactt 34144553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 34157222 - 34157169
Alignment:
Q  65 gccataaacaaagttggcattgttagctttcatccaccacaaagaatgatactt 118  Q
    |||||||||||||||||||||||| ||||||| | |||| ||||||| ||||||    
T  34157222 gccataaacaaagttggcattgttggctttcagctaccaaaaagaattatactt 34157169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 431 - 512
Target Start/End: Original strand, 25064684 - 25064767
Alignment:
Q  431 tgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcacggg 512  Q
    |||| ||| ||||| |||| ||||||||| ||||||  |||||||||||| |||||||  | ||||||||| ||||||||||||    
T  25064684 tgaagaagtggggtgtctggggttcgaaccccaacccctgcatataataatgcatgtccataccaactgaactatgctcacggg 25064767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 421 - 508
Target Start/End: Complemental strand, 30833107 - 30833018
Alignment:
Q  421 tttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctca 508  Q
    |||||||| | ||||||| ||||| || | ||||||||| || |||  ||||||||| || ||||||| |||||||||||| ||||||||    
T  30833107 tttttcaaggagaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgaactatgctca 30833018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 430 - 512
Target Start/End: Complemental strand, 19136010 - 19135926
Alignment:
Q  430 gtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcacggg 512  Q
    ||||||||| | ||| | ||||||||||||  |||||  |||||||||||| ||||||| |||||||| ||  ||||||||||||    
T  19136010 gtgaataagtgtggtgtatgaggttcgaacgtcaacccatgcatataataatgcatgtccctgccaaccgagctatgctcacggg 19135926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 444
Target Start/End: Complemental strand, 34571497 - 34571444
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggt 444  Q
    |||||| || |||||||||||||||| ||||||||||| | ||||||| |||||    
T  34571497 gtcaagtagactagtggttagaattccccttttttcaaagcgaataagtggggt 34571444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 38076955 - 38076705
Alignment:
Q  1 taattacaaaaataagttagccgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatcca 100  Q
    ||||||||||||||||||||  ||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  38076955 taattacaaaaataagttagtagatacccaaacaaagtaacggatccgaccaccatctactcgtgccataaacaaagttggcattgttagctttcagcca 38076856  T
Q  101 ccacaaagaatgatacttaaccttttctacaagatctatcatagtaagttgtgtattattgaaaattctattatttctttcgtgtcaaacaatccataca 200  Q
    |||||| |||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38076855 ccacaatgaattatacttcaccttttctacaagatctatcatagcaagttgtgtattattgaaaattctattatttctttcgtgccaaacaatccataca 38076756  T
Q  201 cacaagagccaaagcatttgcatgattgtccggcgcttcgtcgacccacca 251  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  38076755 cacaagagccaaaacatttgcatgattgtccgacgcttcgtcgacccacca 38076705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 14746722 - 14746971
Alignment:
Q  2 aattacaaaaataagttagccgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatccac 101  Q
    ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  14746722 aattacaaaaataagttagtcgatacccaaacaaagtaacgggtccgaccaccatctactcgtgccataaacaaagttggcattgttagctttcagccac 14746821  T
Q  102 cacaaagaatgatacttaaccttttctacaagatctatcatagtaagttgtgtattattgaaaattctattatttctttcgtgtcaaacaatccatacac 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  14746822 cacaaagaatgatacttaaccttttctacaagatctatcatagtaagctcagtattattgaaaattctattatttctttcgtggcaaacaacccatacac 14746921  T
Q  202 acaagagccaaagcatttgcatgattgtccggcgcttcgtcgacccacca 251  Q
    ||||||||||||||||||||||||||||||| |||||| | |||||||||    
T  14746922 acaagagccaaagcatttgcatgattgtccgccgcttcattgacccacca 14746971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 402 - 518
Target Start/End: Complemental strand, 35498505 - 35498389
Alignment:
Q  402 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaa 499  Q
    |||||| |||||||| ||||||| ||| ||||||||| ||||| || || ||| |||| ||||||  |||||||||||| ||||||| |||||||||||     
T  35498505 tagtggctagaattcaccttttt-caaagtgaataagtggggtgtccgaagtttgaac-ccaacccctgcatataataatgcatgtccctgccaactgag 35498408  T
Q  500 ttatgctcacgggaaaaaa 518  Q
    ||||||| |||||| ||||    
T  35498407 ttatgcttacgggacaaaa 35498389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 465 - 514
Target Start/End: Complemental strand, 7465510 - 7465461
Alignment:
Q  465 cctgcatataataaggcatgtctctgccaactgaattatgctcacgggaa 514  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||||    
T  7465510 cctgcatataataatgcatgtctctgccaactgagctatgctcacgggaa 7465461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 512
Target Start/End: Original strand, 27726345 - 27726467
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctc 488  Q
    |||||| ||||||||||||||||||| || |||| ||| | |||||||| |||| || ||||||||||| ||  |  |||| |||||||| ||||||| |    
T  27726345 gtcaagtagtctagtggttagaattcacc-ttttccaaagcgaataagcagggtgtccgaggttcgaaccccggccactgcttataataatgcatgtccc 27726443  T
Q  489 tgccaactgaattatgctcacggg 512  Q
    ||||||||||  |||| |||||||    
T  27726444 tgccaactgagctatgttcacggg 27726467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 512
Target Start/End: Complemental strand, 43635707 - 43635585
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 488  Q
    |||||| ||| |||||| |||||||| || ||| | || ||||||||| ||||| || | ||||||||| || |||  ||||||||| || |||||| ||    
T  43635707 gtcaagtagtttagtggctagaattcaccctttgt-aaggtgaataagtggggtgtccggggttcgaaccccgaccgctgcatataacaatgcatgtttc 43635609  T
Q  489 tgccaactgaattatgctcacggg 512  Q
    |||||||||| |||||||||||||    
T  43635608 tgccaactgagttatgctcacggg 43635585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 391 - 511
Target Start/End: Complemental strand, 32814946 - 32814825
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 488  Q
    |||||| |||| |||||||| ||||| |||||||| | | |||||||| ||||| || | | |||||||||| |||  |||||||||||| ||||||| |    
T  32814946 gtcaagtagtccagtggttaaaattcaccttttttta-tatgaataagtggggtgtccgggattcgaactccgacccctgcatataataatgcatgtccc 32814848  T
Q  489 tgccaactgaattatgctcacgg 511  Q
    | ||||||||  |||||||||||    
T  32814847 taccaactgagctatgctcacgg 32814825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 401 - 509
Target Start/End: Complemental strand, 44409309 - 44409201
Alignment:
Q  401 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactga 498  Q
    |||||||||||||||| ||||||| ||| ||||||||| ||||| |  | ||||||||| || |||  |||||||||||| ||||||| |||| ||||||    
T  44409309 ctagtggttagaattcaccttttt-caaggtgaataagtggggtgttcg-ggttcgaaccccgacccttgcatataataatgcatgtccctgctaactga 44409212  T
Q  499 attatgctcac 509  Q
     ||||||||||    
T  44409211 gttatgctcac 44409201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 32309125 - 32309229
Alignment:
Q  392 tcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctct 489  Q
    ||||| |||||||||| |||||||| | |||||| || ||||||||  ||||| |||||| |||||||||| |||  ||||||||| || ||||||| ||    
T  32309125 tcaagtagtctagtggctagaattcacatttttt-aaggtgaataactggggtgtctgagattcgaactccgacccctgcatataacaatgcatgtccct 32309223  T
Q  490 gccaac 495  Q
    ||||||    
T  32309224 gccaac 32309229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 512
Target Start/End: Original strand, 32514690 - 32514734
Alignment:
Q  468 gcatataataaggcatgtctctgccaactgaattatgctcacggg 512  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||    
T  32514690 gcatataataatacatgtctctgccaactgaactatgctcacggg 32514734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 512
Target Start/End: Original strand, 45267942 - 45268024
Alignment:
Q  432 gaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctctgccaactgaattatgctcacggg 512  Q
    ||||||| ||||| |||  |||||||||||| ||  |||||||||||||   |||||||||||||||||  ||||||||||||    
T  45267942 gaataagtggggtgtctatggttcgaactccgactcctgcatataataatatatgtctctgccaactgagctatgctcacggg 45268024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 514
Target Start/End: Original strand, 14772401 - 14772435
Alignment:
Q  480 gcatgtctctgccaactgaattatgctcacgggaa 514  Q
    ||||||||||||||||||| |||||||||||||||    
T  14772401 gcatgtctctgccaactgagttatgctcacgggaa 14772435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 514
Target Start/End: Original strand, 15222853 - 15222887
Alignment:
Q  480 gcatgtctctgccaactgaattatgctcacgggaa 514  Q
    ||||||||||||||||||| |||||||||||||||    
T  15222853 gcatgtctctgccaactgagttatgctcacgggaa 15222887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 498
Target Start/End: Complemental strand, 19924859 - 19924778
Alignment:
Q  419 cttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctctgccaactga 498  Q
    ||||||| || ||||||||| ||||||| || | |||||||||  ||  ||||||||||||| ||||||| |||||||||||    
T  19924859 ctttttttaaggtgaataagtggggtatatgggattcgaactctcacttctgcatataataatgcatgtccctgccaactga 19924778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 513
Target Start/End: Complemental strand, 11808158 - 11808034
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 488  Q
    |||||| |||||||| |||||||||| | |||||  || ||||||||| ||||| || | ||||||||| || |||  ||||||||| || ||||||| |    
T  11808158 gtcaagtagtctagttgttagaattcacgtttttctaaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccc 11808059  T
Q  489 tgccaactgaattatgctcacggga 513  Q
    | |||| |||  || ||||||||||    
T  11808058 taccaattgagctaagctcacggga 11808034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 508
Target Start/End: Original strand, 43712300 - 43712407
Alignment:
Q  402 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaactgaa 499  Q
    |||||| |||||||| ||||||| ||| | | ||||| |||||||| ||||||||||| || |  |||| |||||| || ||||||| || ||||||||     
T  43712300 tagtggctagaattctccttttt-caaggaggataagtggggtatccgaggttcgaaccccgacccctgtatataacaatgcatgtccctaccaactgag 43712398  T
Q  500 ttatgctca 508  Q
    |||||||||    
T  43712399 ttatgctca 43712407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 38356262 - 38356012
Alignment:
Q  1 taattacaaaaataagttagccgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatcca 100  Q
    |||||||||||||||||||| |||||||||||||||||||| | ||||||||||| ||| | |||||||||||||||||||||||||||||||||| |||    
T  38356262 taattacaaaaataagttagtcgatacccaaacaaagtaacaggtccgaccaccacctattcgtgccataaacaaagttggcattgttagctttcagcca 38356163  T
Q  101 ccacaaagaatgatacttaaccttttctacaagatctatcatagtaagttgtgtattattgaaaattctattatttctttcgtgtcaaacaatccataca 200  Q
    |||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38356162 ccacaatgaattatacttaatcttttctacaagatctatcatagcaagttgtgtattattgaaaattctattatttctttcgtgccaaacaatccataca 38356063  T
Q  201 cacaagagccaaagcatttgcatgattgtccggcgcttcgtcgacccacca 251  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38356062 cacaagagccaaagcatttgcatgattgtccagcgcttcgtcgacccacca 38356012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 52195180 - 52194930
Alignment:
Q  1 taattacaaaaataagttagccgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatcca 100  Q
    |||||||||||| ||||||| ||||||||||| |||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  52195180 taattacaaaaacaagttagtcgatacccaaaaaaagtaacgggtccgaccaccatctactcgtgccataaacaaagttggcattgttagctttcagcca 52195081  T
Q  101 ccacaaagaatgatacttaaccttttctacaagatctatcatagtaagttgtgtattattgaaaattctattatttctttcgtgtcaaacaatccataca 200  Q
    || ||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| |||||||||||  ||||| ||||| | |    
T  52195080 ccgcaatgaattatacttaaccttttctacaagatctatcatattaagttgggtattgttgaaaattctatcatttctttcgttccaaactatccacata 52194981  T
Q  201 cacaagagccaaagcatttgcatgattgtccggcgcttcgtcgacccacca 251  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  52194980 cacaagagccaaagcatttgcatgattgtccggcgctttgtcgatccacca 52194930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 55366180 - 55366430
Alignment:
Q  1 taattacaaaaataagttagccgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatcca 100  Q
    |||||||||||| |||| || |||||||||||||||||||| | |||||||||||||     ||||| |||||||| ||||| ||||| ||||||| |||    
T  55366180 taattacaaaaacaagtcagtcgatacccaaacaaagtaacgggtccgaccaccatcggaacgtgccgtaaacaaaattggcgttgttggctttcagcca 55366279  T
Q  101 ccacaaagaatgatacttaaccttttctacaagatctatcatagtaagttgtgtattattgaaaattctattatttctttcgtgtcaaacaatccataca 200  Q
    |||||| ||||||||||||||||||||||||||||| | |||| ||| ||| | ||| |||||  ||||||||||||||||||  ||||| ||||| |||    
T  55366280 ccacaatgaatgatacttaaccttttctacaagatcgaacatattaacttgggaattcttgaatgttctattatttctttcgttccaaactatccacaca 55366379  T
Q  201 cacaagagccaaagcatttgcatgattgtccggcgcttcgtcgacccacca 251  Q
    ||||| ||||||| ||| ||||||| | |||||||||| ||||||||||||    
T  55366380 cacaaaagccaaatcatctgcatgaatatccggcgctttgtcgacccacca 55366430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1660628 - 1660393
Alignment:
Q  1 taattacaaaaataagttagccgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttc-atcc 99  Q
    |||||||||||| |||| ||  |||| |||||||| ||||| | |  || ||||||||||| |||||||||| ||||||| |||||||||||||  | ||    
T  1660628 taattacaaaaacaagtcagttgatatccaaacaa-gtaacggatttgatcaccatctactcgtgccataaataaagttgccattgttagctttttagcc 1660530  T
Q  100 accacaaagaatgatacttaaccttttctacaagatctatcatagtaagttgtgtattattgaaaattctattatttctttcgtgtcaaacaatccatac 199  Q
    ||||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |||| ||||||||||||||  ||||| ||||  ||    
T  1660529 accacaatgaattatacttaaccttttctacaagatctatcatattaagttgggtattcttgaatattccattatttctttcgttccaaactatcc--ac 1660432  T
Q  200 acacaagagccaaagcatttgcatgattgtccggcgctt 238  Q
    |||||| | ||||||||| ||||||| ||||||| ||||    
T  1660431 acacaaaaaccaaagcatctgcatgaatgtccggtgctt 1660393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 53272791 - 53272610
Alignment:
Q  1 taattacaaaaataagttagccgatacccaaacaaagtaactgt-tccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatcc 99  Q
    |||||||||||| ||||||| |||||| |||| ||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  53272791 taattacaaaaacaagttagtcgatactcaaataaagtaa-tgtgtccgaccaccatctactcgtgccataaacaaagttggcattgttagctttcagcc 53272693  T
Q  100 accacaaagaatgatacttaaccttttctacaagatctatcatagtaagttgtgtattattgaaaattctattatttctttcgt 183  Q
    |||||||  ||| ||| |||||| || || |||||||||||||| |||| || ||| | ||||| |||||||||||| ||||||    
T  53272692 accacaataaattatagttaacc-ttcctgcaagatctatcatattaagatgagtaatcttgaatattctattatttttttcgt 53272610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 391 - 507
Target Start/End: Complemental strand, 33533322 - 33533205
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 488  Q
    |||||| |||||||| |||||||||| | |||||| || ||||||||| ||| | |||  ||||||||| ||||||  | ||||||| || |||||||||    
T  33533322 gtcaagtagtctagttgttagaattcacttttttt-aaggtgaataagtgggatgtctatggttcgaaccccaaccactacatataacaatgcatgtctc 33533224  T
Q  489 tgccaactgaattatgctc 507  Q
    |||||||||| ||||||||    
T  33533223 tgccaactgagttatgctc 33533205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 36624365 - 36624258
Alignment:
Q  22 cgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatccaccacaaagaatgatacttaac 121  Q
    |||||||||||||||||||| | |||||||||||  ||    ||||||||||||| |||||||||| |||||| | |||||| | ||| ||||| || ||    
T  36624365 cgatacccaaacaaagtaacaggtccgaccaccagttatgattgccataaacaaaattggcattgtgagctttaagccaccaaagagattgatatttcac 36624266  T
Q  122 cttttcta 129  Q
    ||||||||    
T  36624265 cttttcta 36624258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 421 - 509
Target Start/End: Original strand, 31108765 - 31108855
Alignment:
Q  421 tttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcac 509  Q
    |||||||| ||||||||| ||||| |||  ||||||||| ||| ||  |||||||||| | ||||||| ||||||||||| ||||||||||    
T  31108765 tttttcaaggtgaataagtggggtgtctcgggttcgaaccccagcccctgcatataattatgcatgtccctgccaactgagttatgctcac 31108855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 422 - 498
Target Start/End: Original strand, 34407096 - 34407174
Alignment:
Q  422 ttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactga 498  Q
    |||||||  |||||||| ||||| |||| ||||||||| ||||||  |||||||||||| ||||||| |||||||||||    
T  34407096 ttttcaagatgaataagtggggtgtctggggttcgaaccccaacccctgcatataataatgcatgtccctgccaactga 34407174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 465 - 511
Target Start/End: Complemental strand, 28951910 - 28951864
Alignment:
Q  465 cctgcatataataaggcatgtctctgccaactgaattatgctcacgg 511  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||||    
T  28951910 cctgcatataataatgcatgtatctgccaactgagttatgctcacgg 28951864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 16985060 - 16985015
Alignment:
Q  469 catataataaggcatgtctctgccaactgaattatgctcacgggaa 514  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||    
T  16985060 catataataatgaatgtctctgccaactgaattatgttcacgggaa 16985015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 510
Target Start/End: Complemental strand, 19149464 - 19149423
Alignment:
Q  469 catataataaggcatgtctctgccaactgaattatgctcacg 510  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  19149464 catataataatgcatgtctctgtcaactgaattatgctcacg 19149423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 18380647 - 18380759
Alignment:
Q  23 gatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatccaccacaaagaatgatacttaacc 122  Q
    |||||||||||| |||||| | | |||||||||  ||    ||||||||||||| |||||||||| || ||| | |||||| | ||||||||| |||||     
T  18380647 gatacccaaacacagtaacgggttcgaccaccaattatgattgccataaacaaaattggcattgtgagatttaagccaccagagagaatgatatttaact 18380746  T
Q  123 ttttctacaagat 135  Q
    ||||||| |||||    
T  18380747 ttttctaaaagat 18380759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 465 - 512
Target Start/End: Original strand, 38555078 - 38555126
Alignment:
Q  465 cctgcatataataaggcat-gtctctgccaactgaattatgctcacggg 512  Q
    |||||||||||||| |||| |||||||||||||||| ||||||||||||    
T  38555078 cctgcatataataatgcattgtctctgccaactgaactatgctcacggg 38555126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 512
Target Start/End: Original strand, 6951841 - 6951888
Alignment:
Q  465 cctgcatataataaggcatgtctctgccaactgaattatgctcacggg 512  Q
    |||||||||||||| ||||||| ||| ||||||| |||||||||||||    
T  6951841 cctgcatataataatgcatgtccctgtcaactgagttatgctcacggg 6951888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 391 - 510
Target Start/End: Original strand, 24160504 - 24160624
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 488  Q
    |||||| ||||| |||| ||||||||  ||||||  || ||||||||| || || || | ||||||||| || |||  ||||||||| |  |||||||||    
T  24160504 gtcaagtagtctggtggctagaattcaactttttgaaa-gtgaataagtggagtgtccggggttcgaaccccgacccctgcatataacagtgcatgtctc 24160602  T
Q  489 tgccaactgaattatgctcacg 510  Q
    |||||||||| |||||||||||    
T  24160603 tgccaactgagttatgctcacg 24160624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 498
Target Start/End: Complemental strand, 51017881 - 51017801
Alignment:
Q  419 cttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctctgccaactga 498  Q
    |||||||||| ||||||||| ||||| || | |||||||||||| ||  |||||||||| || ||||||| |||||||||||    
T  51017881 cttttttcaaagtgaataagtggggtgtccg-ggttcgaactccgactcctgcatataacaatgcatgtccctgccaactga 51017801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 510
Target Start/End: Complemental strand, 6284913 - 6284876
Alignment:
Q  473 taataaggcatgtctctgccaactgaattatgctcacg 510  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  6284913 taataatgcatgtccctgccaactgaattatgctcacg 6284876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 10349662 - 10349715
Alignment:
Q  65 gccataaacaaagttggcattgttagctttcatccaccacaaagaatgatactt 118  Q
    |||||||||||| ||||||||||| ||||| | |||||| ||||||| ||||||    
T  10349662 gccataaacaaaattggcattgtttgctttaagccaccataaagaataatactt 10349715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 514
Target Start/End: Original strand, 49299217 - 49299339
Alignment:
Q  392 tcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacctg--catataataaggcatgtctct 489  Q
    ||||| |||||||||| ||||||||  |||| | ||| ||||||||| || || |||| ||||||||| ||| |||   |||||||| | ||||||| ||    
T  49299217 tcaagtagtctagtggctagaattcagctttct-caaggtgaataagtggagtgtctg-ggttcgaaccccagcctttacatataattatgcatgtccct 49299314  T
Q  490 gccaactgaattatgctcacgggaa 514  Q
    | |||||||| ||||||||||||||    
T  49299315 gtcaactgaactatgctcacgggaa 49299339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 195; Significance: 1e-105; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 28732441 - 28732191
Alignment:
Q  1 taattacaaaaataagttagccgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatcca 100  Q
    |||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  28732441 taattacaaaaacaagttagtcgatacccaaacaaagtaacgggtccgaccaccatctactcgtgccataaacaaagttggcattgttagctttcagcca 28732342  T
Q  101 ccacaaagaatgatacttaaccttttctacaagatctatcatagtaagttgtgtattattgaaaattctattatttctttcgtgtcaaacaatccataca 200  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||    
T  28732341 ccacaatgaattatacttaaccttttctacaagatctatcatagtaagttgggtattattgaaaattctattatttctttcgtgctaaacaatccataca 28732242  T
Q  201 cacaagagccaaagcatttgcatgattgtccggcgcttcgtcgacccacca 251  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||||||    
T  28732241 cacaagagccaaagcatttgcataattgttcggcgctttgtcgacccacca 28732191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 8081674 - 8081794
Alignment:
Q  22 cgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatccaccacaaagaatgatacttaac 121  Q
    |||||| ||||||||||||  | |||||||||||||||   |||||||||||||| ||| ||||||||||||||| |||||| ||| | | ||| |||||    
T  8081674 cgatactcaaacaaagtaatgggtccgaccaccatctatgagtgccataaacaaaattgacattgttagctttcagccaccaaaaaaagttatatttaac 8081773  T
Q  122 cttttctacaagatctatcat 142  Q
    |||||||| ||| ||||||||    
T  8081774 cttttctaaaagttctatcat 8081794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 512
Target Start/End: Original strand, 49039431 - 49039543
Alignment:
Q  401 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaactga 498  Q
    ||||||| |||||||| ||||||| ||| ||||||||| ||||| || | ||||||||| |||   ||||||||||| || ||||||| |||||||||||    
T  49039431 ctagtggctagaattcaccttttt-caaggtgaataagtggggtgtccggggttcgaaccccagtccctgcatataacaatgcatgtccctgccaactga 49039529  T
Q  499 attatgctcacggg 512  Q
      ||||||||||||    
T  49039530 gctatgctcacggg 49039543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 430 - 512
Target Start/End: Original strand, 15640457 - 15640542
Alignment:
Q  430 gtgaataagcggggtatctgaggttcgaactcc-aac-ctgcatataataaggca-tgtctctgccaactgaattatgctcacggg 512  Q
    ||||||||| ||||| |||||||||||||| || ||| ||||||||||||| ||| ||||||||||||||||  ||||||||||||    
T  15640457 gtgaataagtggggtgtctgaggttcgaaccccgaacactgcatataataatgcattgtctctgccaactgagatatgctcacggg 15640542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 402 - 513
Target Start/End: Complemental strand, 34684674 - 34684564
Alignment:
Q  402 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctctgccaactgaa 499  Q
    ||||||||||||||| |||| |   || ||||||||| ||||| ||||||||||||| ||||||  ||||||||||||| | ||  | || |||| ||||    
T  34684674 tagtggttagaattcaccttat---aaggtgaataagtggggtgtctgaggttcgaattccaacctctgcatataataatgtattcccctaccaattgaa 34684578  T
Q  500 ttatgctcacggga 513  Q
    ||||||||||||||    
T  34684577 ttatgctcacggga 34684564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 392 - 460
Target Start/End: Complemental strand, 39293647 - 39293579
Alignment:
Q  392 tcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaact 460  Q
    ||||| |||||||| | |||||||| ||||||||||| ||||||||| ||| | |||||||||||||||    
T  39293647 tcaagtagtctagtagctagaattcaccttttttcaaggtgaataagtgggatgtctgaggttcgaact 39293579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 401 - 510
Target Start/End: Complemental strand, 49319503 - 49319392
Alignment:
Q  401 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactga 498  Q
    ||||||| || ||||| ||||||||||| ||||||||| ||||| || | |||| |||| || |||  |||||||||||| |||||||  ||||||||||    
T  49319503 ctagtggctataattcaccttttttcaaggtgaataagtggggtgtccggggttggaaccccgacccctgcatataataatgcatgtccatgccaactga 49319404  T
Q  499 attatgctcacg 510  Q
      ||||||||||    
T  49319403 gctatgctcacg 49319392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 512
Target Start/End: Original strand, 54854155 - 54854277
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 488  Q
    |||||| |||||||||| |||||||| | ||||||||| ||||||||| | | | || | ||||||||| ||| ||  |||||||||| | ||||||| |    
T  54854155 gtcaagtagtctagtggctagaattcac-ttttttcaaggtgaataagtgtgatgtccggggttcgaaccccagcccctgcatataattatgcatgtccc 54854253  T
Q  489 tgccaactgaattatgctcacggg 512  Q
    ||||||||||  ||||||||||||    
T  54854254 tgccaactgagctatgctcacggg 54854277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 56338050 - 56337943
Alignment:
Q  22 cgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatccaccacaaagaatgatacttaac 121  Q
    |||||||||||||||| ||| | ||| ||||||||||    |  |||||||||||  |||||||||||||||| | |||||||||||||  ||| |||||    
T  56338050 cgatacccaaacaaagcaaccggtccaaccaccatctttgagaaccataaacaaaagtggcattgttagcttttagccaccacaaagaagtatatttaac 56337951  T
Q  122 cttttcta 129  Q
    ||| ||||    
T  56337950 cttatcta 56337943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 401 - 498
Target Start/End: Original strand, 21023338 - 21023435
Alignment:
Q  401 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa-cctgcatataataaggcatgtctctgccaactga 498  Q
    |||||||||||||||| || |||||||| ||||||||| ||||| || | ||||||||| |||| || | |||||| || |||||| ||||||||||||    
T  21023338 ctagtggttagaattcacc-tttttcaaggtgaataagtggggtgtcgggggttcgaaccccaaccccggatataacaatgcatgtttctgccaactga 21023435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 451 - 512
Target Start/End: Complemental strand, 9062236 - 9062173
Alignment:
Q  451 ggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcacggg 512  Q
    ||||||||| ||||||  |||||||||||| ||||||| ||||||||| || ||||||||||||    
T  9062236 ggttcgaaccccaacccttgcatataataatgcatgtccctgccaactaaactatgctcacggg 9062173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 421 - 513
Target Start/End: Original strand, 18740921 - 18741016
Alignment:
Q  421 tttttcaatgtgaataagcgggg-tatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcacggga 513  Q
    |||||||| ||||||||| |||| | | || |||||||||||| |||  |||||||||||| |||| |||||||||||||| || |||| ||||||    
T  18740921 tttttcaaggtgaataagtgggggtgtttggggttcgaactccgacccctgcatataataatgcatatctctgccaactgagttgtgcttacggga 18741016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 429 - 486
Target Start/End: Complemental strand, 44273018 - 44272959
Alignment:
Q  429 tgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtc 486  Q
    |||||||||| |||||||| |||||||||||||| |  |||||||||||||| |||||||    
T  44273018 tgtgaataagtggggtatccgaggttcgaactccgacccctgcatataataatgcatgtc 44272959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 512
Target Start/End: Original strand, 41492549 - 41492596
Alignment:
Q  465 cctgcatataataaggcatgtctctgccaactgaattatgctcacggg 512  Q
    |||||||||||||| ||||||| |||||||||||  ||||||||||||    
T  41492549 cctgcatataataatgcatgtccctgccaactgagctatgctcacggg 41492596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 478
Target Start/End: Complemental strand, 47416576 - 47416499
Alignment:
Q  402 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataa 478  Q
    ||||||||||||||| || |||||||| ||||||||| ||||| || ||| ||||||| ||||  ||||||||||||||    
T  47416576 tagtggttagaattcacc-tttttcaaagtgaataagtggggtgtccgagattcgaaccccaacccctgcatataataa 47416499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 510
Target Start/End: Original strand, 4419737 - 4419782
Alignment:
Q  465 cctgcatataataaggcatgtctctgccaactgaattatgctcacg 510  Q
    ||||||||||| || ||||||||||| ||||||| |||||||||||    
T  4419737 cctgcatataacaatgcatgtctctgacaactgagttatgctcacg 4419782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 514
Target Start/End: Complemental strand, 27921940 - 27921891
Alignment:
Q  465 cctgcatataataaggcatgtctctgccaactgaattatgctcacgggaa 514  Q
    |||||||||||||| ||||||| || ||||||||  ||||||||||||||    
T  27921940 cctgcatataataatgcatgtccctaccaactgagctatgctcacgggaa 27921891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 511
Target Start/End: Complemental strand, 53335351 - 53335306
Alignment:
Q  466 ctgcatataataaggcatgtctctgccaactgaattatgctcacgg 511  Q
    ||||||||||  | ||||||| ||||||||||||||||||||||||    
T  53335351 ctgcatataacgatgcatgtcgctgccaactgaattatgctcacgg 53335306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 3704297 - 3704546
Alignment:
Q  1 taattacaaaaataagttagccgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatcca 100  Q
    |||||||||||| || | || |||||||||||||||||||| | ||||||||||||||||  |||||||||||||||||||||||||||||||||| |||    
T  3704297 taattacaaaaaaaa-tgagtcgatacccaaacaaagtaacgggtccgaccaccatctacccgtgccataaacaaagttggcattgttagctttcagcca 3704395  T
Q  101 ccacaaagaatgatacttaaccttttctacaagatctatcatagtaagttgtgtattattgaaaattctattatttctttcgtgtcaaacaatccataca 200  Q
    |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  3704396 ccacaatgaattatacttaaccttttttacaagatctatcatagtaagttgtgtattattgaaaattctattatttctttcgtgccaaataatccataca 3704495  T
Q  201 cacaagagccaaagcatttgcatgattgtccggcgcttcgtcgacccacca 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3704496 cacaagagccaaagcatttgcatgattgtccggcgcttcgtcgacccacca 3704546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 856335 - 856085
Alignment:
Q  1 taattacaaaaataagttagccgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatcca 100  Q
    |||||||||||| ||||||| ||||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  856335 taattacaaaaacaagttagtcgatacccaaacaaagtaacgagtccgaccaccatctactcgtgccataaacaaagttggcattgttagctttcagcca 856236  T
Q  101 ccacaaagaatgatacttaaccttttctacaagatctatcatagtaagttgtgtattattgaaaattctattatttctttcgtgtcaaacaatccataca 200  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||| |||||||||||    
T  856235 ccacaatgaattatacttaaccttttctacaagatctatcatagtaagttgggtgttattgaaaattatattatttctttcgtgccaatcaatccataca 856136  T
Q  201 cacaagagccaaagcatttgcatgattgtccggcgcttcgtcgacccacca 251  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  856135 cacaagagccaaagcacttgcatgattgtccggcgctttgtcgacccacca 856085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 34833135 - 34832885
Alignment:
Q  1 taattacaaaaataagttagccgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatcca 100  Q
    |||||||||||| |||| || |||||||||||||||||||| | |||||||||||||||   ||||| |||||||| ||||| ||||| ||||||| |||    
T  34833135 taattacaaaaacaagtcagtcgatacccaaacaaagtaacgggtccgaccaccatctaaacgtgccgtaaacaaaattggcgttgttggctttcagcca 34833036  T
Q  101 ccacaaagaatgatacttaaccttttctacaagatctatcatagtaagttgtgtattattgaaaattctattatttctttcgtgtcaaacaatccataca 200  Q
    |||||| ||||||||||||||||||||||||||||| | |||| ||| ||| | ||| ||||| ||||||||||||||||| |  ||||| ||||| |||    
T  34833035 ccacaatgaatgatacttaaccttttctacaagatcgaacatattaacttgggaattcttgaatattctattatttctttcattccaaactatccacaca 34832936  T
Q  201 cacaagagccaaagcatttgcatgattgtccggcgcttcgtcgacccacca 251  Q
    ||||| ||||||| ||| ||||||| | |||| ||||| ||||||||||||    
T  34832935 cacaaaagccaaatcatctgcatgaatatccgacgctttgtcgacccacca 34832885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 39072726 - 39072831
Alignment:
Q  22 cgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatccaccacaaagaatgatacttaac 121  Q
    ||||| |||||||||||||| | |||||| |||||||| | |||||||||||||| ||| ||||||||||||||| |||||| || |||| || ||||||    
T  39072726 cgatatccaaacaaagtaacgggtccgactaccatctaatcgtgccataaacaaacttgacattgttagctttcagccaccaaaaggaattatgcttaac 39072825  T
Q  122 cttttc 127  Q
    ||||||    
T  39072826 cttttc 39072831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 391 - 514
Target Start/End: Original strand, 39334857 - 39334981
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 488  Q
    |||||| |||||||||| |||||||| ||||||| ||| ||||||||| ||| | ||||  |||||||| ||| ||  || ||||||||| ||||||| |    
T  39334857 gtcaagtagtctagtggctagaattcaccttttt-caaagtgaataagtgggatgtctggagttcgaaccccagcccctgtatataataatgcatgtccc 39334955  T
Q  489 tgccaactgaattatgctcacgggaa 514  Q
    |||||||||| |||||||||||||||    
T  39334956 tgccaactgagttatgctcacgggaa 39334981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 512
Target Start/End: Complemental strand, 34107393 - 34107271
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 488  Q
    |||||| |||||||||| |||||||| | ||||| ||| ||||||||| ||||| ||||  ||||||||  |||||  |||||||||| |  |||||| |    
T  34107393 gtcaagtagtctagtggctagaattcacattttt-caaggtgaataagtggggtgtctggagttcgaacctcaacccctgcatataattatacatgtccc 34107295  T
Q  489 tgccaactgaattatgctcacggg 512  Q
    ||||||||||  ||||||||||||    
T  34107294 tgccaactgagctatgctcacggg 34107271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 401 - 498
Target Start/End: Original strand, 44132548 - 44132647
Alignment:
Q  401 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacct--gcatataataaggcatgtctctgccaactga 498  Q
    ||||||||||| |||  |||||||||||  ||||||| |||||| ||||  |||||||| || ||||  |||||||| || |||||||||||||||||||    
T  44132548 ctagtggttagtatttaccttttttcaagatgaataaacggggtgtctggagttcgaaccccgacctctgcatataacaatgcatgtctctgccaactga 44132647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 398 - 510
Target Start/End: Complemental strand, 1244681 - 1244568
Alignment:
Q  398 agtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaac 495  Q
    |||||||||| |||||||| ||||||| ||| ||||||||| ||||| || | ||||||||| || |||  ||||||||  || | ||||| ||||||||    
T  1244681 agtctagtggctagaattcaccttttt-caaggtgaataagtggggtgtccggggttcgaacccccacccctgcatatagcaatgtatgtccctgccaac 1244583  T
Q  496 tgaattatgctcacg 510  Q
    |||| ||||||||||    
T  1244582 tgaactatgctcacg 1244568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 512
Target Start/End: Original strand, 20942085 - 20942204
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactcca--acctgcatataataaggcatgtctc 488  Q
    |||||| |||||||||  |||||||| | ||||||||| ||||||||| | ||| |||| |||||||||||||   ||| |||||||| | ||||||| |    
T  20942085 gtcaagtagtctagtgactagaattcac-ttttttcaaggtgaataagtgaggtgtctggggttcgaactccatcccctacatataattatgcatgtccc 20942183  T
Q  489 tgccaactgaattatgctcacggg 512  Q
    |||||||||   ||||||||||||    
T  20942184 tgccaactg---tatgctcacggg 20942204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 513
Target Start/End: Complemental strand, 32288467 - 32288372
Alignment:
Q  420 ttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaactgaattatgctcacggga 513  Q
    ||||||||| ||||||||| ||||| || ||||||||||| || |  ||| |||||||||| |||||| |||| |||||||  || ||||||||||    
T  32288467 ttttttcaaggtgaataagtggggtgtccgaggttcgaaccccgatccctacatataataatgcatgtttctgtcaactgagctacgctcacggga 32288372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 391 - 510
Target Start/End: Original strand, 38581582 - 38581701
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacct-gcatataataaggcatgtctct 489  Q
    |||||| || |||||||||||||| | |||||||| ||  |||||||| ||| | || ||||||||||   |||| | ||||||||||| | ||||||||    
T  38581582 gtcaagtagcctagtggttagaatacacctttttt-aagatgaataagtgggatgtccgaggttcgaatctcaacgttgcatataataatgtatgtctct 38581680  T
Q  490 gccaactgaattatgctcacg 510  Q
     |||||||| |||||||||||    
T  38581681 accaactgagttatgctcacg 38581701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 514
Target Start/End: Complemental strand, 38807983 - 38807876
Alignment:
Q  409 tagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaactgaattatgct 506  Q
    |||||||| | ||||||||| ||||||||| | ||| |||| ||||||||   ||   |||||||||||| | ||||||| ||||||||||| |||| ||    
T  38807983 tagaattcactttttttcaaggtgaataagtgcggtgtctggggttcgaatctcattccctgcatataattatgcatgtccctgccaactgagttatact 38807884  T
Q  507 cacgggaa 514  Q
    ||||||||    
T  38807883 cacgggaa 38807876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 511
Target Start/End: Complemental strand, 2057581 - 2057479
Alignment:
Q  408 ttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacctgcatataataaggcatgtctctgccaactgaattatgctc 507  Q
    ||||||||| |||||||| || ||||||||| ||||| || | | ||||||||| | ||||||||||| || | || || |||||||||||  |||||||    
T  2057581 ttagaattcacctttttt-aaggtgaataagtggggtgtccgggattcgaactcgaccctgcatataacaatgtatatccctgccaactgagctatgctc 2057483  T
Q  508 acgg 511  Q
    ||||    
T  2057482 acgg 2057479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 511
Target Start/End: Original strand, 917342 - 917388
Alignment:
Q  465 cctgcatataataaggcatgtctctgccaactgaattatgctcacgg 511  Q
    |||||||||||||| |||||||||| |||||||| ||| ||||||||    
T  917342 cctgcatataataatgcatgtctctaccaactgagttaagctcacgg 917388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 430 - 513
Target Start/End: Complemental strand, 3179405 - 3179320
Alignment:
Q  430 gtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaactgaattatgctcacggga 513  Q
    ||||||||| ||||| ||||||||||||||  | |  |||||||||||||| ||||   ||| |||||||| ||||||||||||||    
T  3179405 gtgaataagtggggtgtctgaggttcgaacctcgacccctgcatataataatgcattgttctaccaactgagttatgctcacggga 3179320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 430 - 512
Target Start/End: Original strand, 21970453 - 21970538
Alignment:
Q  430 gtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggca-tgtctctgccaactgaattatgctcacggg 512  Q
    |||||||||||||||||| | ||||||||| || |  |||||||||||||| ||| |||| ||| |||||||  ||||||||||||    
T  21970453 gtgaataagcggggtatccggggttcgaaccccgatccctgcatataataatgcattgtccctgtcaactgagctatgctcacggg 21970538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 659 - 701
Target Start/End: Complemental strand, 26545950 - 26545908
Alignment:
Q  659 agctaaattaacatacctaaattgacatcgaagagaatcaaac 701  Q
    ||||||||||||  ||||||||||| |||||||||||||||||    
T  26545950 agctaaattaacccacctaaattgatatcgaagagaatcaaac 26545908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 511
Target Start/End: Complemental strand, 34376586 - 34376540
Alignment:
Q  465 cctgcatataataaggcatgtctctgccaactgaattatgctcacgg 511  Q
    ||||||||||| || ||||||| |||||||||||||||| |||||||    
T  34376586 cctgcatataacaatgcatgtccctgccaactgaattatactcacgg 34376540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 511
Target Start/End: Original strand, 22014713 - 22014754
Alignment:
Q  470 atataataaggcatgtctctgccaactgaattatgctcacgg 511  Q
    ||||||||| ||||||||||| |||||||| |||||||||||    
T  22014713 atataataatgcatgtctctgtcaactgaactatgctcacgg 22014754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 430 - 511
Target Start/End: Complemental strand, 44187785 - 44187701
Alignment:
Q  430 gtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatg-tctctgccaactgaattatgctcacgg 511  Q
    ||||||||| ||||| |||| ||||||||| || |||  |||||||||||| ||||  || |||||||||||| |||||||||||    
T  44187785 gtgaataagtggggtgtctggggttcgaaccccgacccctgcatataataatgcattatccctgccaactgaactatgctcacgg 44187701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 512
Target Start/End: Original strand, 44487754 - 44487865
Alignment:
Q  402 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaa 499  Q
    ||||||||||||||| |||||||| || ||||||||| ||| | || | ||||||||||||  ||  |||||||||||| ||||||| ||  |||||||     
T  44487754 tagtggttagaattcacctttttt-aaggtgaataagtgggatgtccggggttcgaactccggcccttgcatataataatgcatgtccctatcaactgag 44487852  T
Q  500 ttatgctcacggg 512  Q
     ||| ||||||||    
T  44487853 ctatactcacggg 44487865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 256 - 740
Target Start/End: Complemental strand, 24653402 - 24652904
Alignment:
Q  256 ccagttgacacataattaatttgcaaacatttaataaagnnnnnnnn-aaggagaacatttaattaagttatcaannnnnnngttaaataaagttaccaa 354  Q
    ||||||||||||||||||||||||||||| |||||||||         ||||| |||||||||| ||||||||||       |||||||||||||| |||    
T  24653402 ccagttgacacataattaatttgcaaacacttaataaagttttttatgaaggataacatttaataaagttatcaatttttttgttaaataaagttatcaa 24653303  T
Q  355 tttattaagtatttattcaaaataaacannnnnnnngtc--aagg-agtctagtggttagaattcgccttttttc-aatgtgaataagcggggtatctga 450  Q
    ||||||||||||||||| ||||||||||         |   |||  |||||| |||||||||||| | ||||||| |||||||||||| || || |||||    
T  24653302 tttattaagtatttatttaaaataaacatacatttttttttaagttagtctaatggttagaattcactttttttctaatgtgaataagtggagtgtctga 24653203  T
Q  451 ggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcacgggaaaaaacaaacatacatacatgcaaataacttttan 548  Q
      ||||||| ||||||  |||||||||||| |||||||| |||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||      
T  24653202 aattcgaaccccaacccctgcatataataatgcatgtct-tgccaactgagttatgctcacgggacaaaataaacatacatacatgcaaataacttttta 24653104  T
Q  549 nnnnnnacaaa--tgcatgcaaacaacacgtgtaagtctctaactcggagac-tttcctttcttttcattacaaaatgaatttggatcattggat----a 641  Q
            |||  ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    |    
T  24653103 ttttttttaaaattgcatgcaaacaacacgtgtaagtctctaactcggagacctttccttttttttcattacaaaatgaatttggatcattggatatata 24653004  T
Q  642 tattaa-nnnnnnnatgaagctaaattaacatacctaaattgacatcgaagagaatcaaacccgatactttatactttaaagaggaacacattctcaaat 740  Q
    ||||||        |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || |||||    
T  24653003 tattaatttttgttatgaagctaaattagcatacctaaattgacatcgaagagaatcaaacccgatactttatactctaaggaggaacacactcccaaat 24652904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 256 - 382
Target Start/End: Complemental strand, 24651402 - 24651274
Alignment:
Q  256 ccagttgacacataattaatttgcaaacatttaataaagnnnnnnnn-aaggagaacatttaattaagttatcaannnnnnn-gttaaataaagttacca 353  Q
    |||||||| ||||||||||||||||||||||||||||||         ||||| |||||||||| ||||||||||        |||||||||||||||||    
T  24651402 ccagttgatacataattaatttgcaaacatttaataaagtcttttttgaaggaaaacatttaataaagttatcaattttttttgttaaataaagttacca 24651303  T
Q  354 atttattaagtatttattcaaaataaaca 382  Q
    |||||||||||||||||| ||||||||||    
T  24651302 atttattaagtatttatttaaaataaaca 24651274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 739 - 802
Target Start/End: Complemental strand, 24652179 - 24652116
Alignment:
Q  739 atgttgttgatatgagttatctaatggcttcaaacagttgtctgtgtcatacttgatgtccatc 802  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  24652179 atgttgttgatatgagttatctaacggcttcaaacagttgtctgtgtcatacttgctctccatc 24652116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 401 - 512
Target Start/End: Original strand, 3535922 - 3536034
Alignment:
Q  401 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactcc--aacctgcatataataaggcatgtctctgccaactga 498  Q
    ||||||||||||||||  ||||||| || ||||||||| ||||| || | ||||||||| ||    |||| |||||| || ||||||| |||||||||||    
T  3535922 ctagtggttagaattc-actttttttaaggtgaataagtggggtgtccggggttcgaaccccggctcctgtatataacaatgcatgtccctgccaactga 3536020  T
Q  499 attatgctcacggg 512  Q
    | ||||||||||||    
T  3536021 actatgctcacggg 3536034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 437
Target Start/End: Original strand, 41181816 - 41181861
Alignment:
Q  392 tcaaggagtctagtggttagaattcgccttttttcaatgtgaataa 437  Q
    ||||| |||||||||||||||||||| |||||||||| ||||||||    
T  41181816 tcaagtagtctagtggttagaattcgtcttttttcaacgtgaataa 41181861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 430 - 514
Target Start/End: Original strand, 6447494 - 6447581
Alignment:
Q  430 gtgaataagcggggtatctgaggttcgaactcc--aacctgcatataataaggca-tgtctctgccaactgaattatgctcacgggaa 514  Q
    ||||||||| ||||| || ||||||||||| ||    |||||||||||||| ||| |||| ||||||||||| |||||||||||||||    
T  6447494 gtgaataagtggggtgtccgaggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagttatgctcacgggaa 6447581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 391 - 494
Target Start/End: Complemental strand, 8934900 - 8934797
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc-tgcatataataaggcatgtctct 489  Q
    |||||| |||||| |||||||||||  |||||||  || ||||||||| |||||||| | || |||||| || ||| |||||||||||| |||| |||||    
T  8934900 gtcaagtagtctaatggttagaatttaccttttta-aaggtgaataagtggggtatccggggctcgaaccccgaccatgcatataataatgcatttctct 8934802  T
Q  490 gccaa 494  Q
    |||||    
T  8934801 gccaa 8934797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 512
Target Start/End: Original strand, 5932069 - 5932116
Alignment:
Q  465 cctgcatataataaggcatgtctctgccaactgaattatgctcacggg 512  Q
    |||||||||||||| |||| || ||| |||||||||||||||||||||    
T  5932069 cctgcatataataatgcatatccctgtcaactgaattatgctcacggg 5932116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 459
Target Start/End: Complemental strand, 6291105 - 6291047
Alignment:
Q  400 tctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaac 459  Q
    ||||||||||||||||| ||||||| ||||||||||||  ||||| |||| |||||||||    
T  6291105 tctagtggttagaattcaccttttt-caatgtgaataaatggggtgtctggggttcgaac 6291047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 29488763 - 29488616
Alignment:
Q  64 tgccataaacaaagttggcattgttagctttcatccaccacaaagaatgatacttaaccttttctacaagatctatcatagtaagttgtgtattattgaa 163  Q
    ||||||||||||| ||||| || | ||| || | |||||||| ||| ||||| ||||||||||||| ||||||| || | |||  ||| ||||| |||||    
T  29488763 tgccataaacaaaattggcgttttgagcattaagccaccacagagattgatatttaaccttttctaaaagatctgtcgtggtagtttgagtattcttgaa 29488664  T
Q  164 aattctattatttctttcgtgtcaaacaatccatacacacaagagcca 211  Q
     ||||| || || | ||| |  ||||| ||||| |||||||| |||||    
T  29488663 tattctgttgttgcgttcattccaaactatccacacacacaatagcca 29488616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 401 - 512
Target Start/End: Original strand, 40250163 - 40250275
Alignment:
Q  401 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctctgccaactga 498  Q
    |||||| ||||||||| | ||||||||||| |||||||  |||| |  ||||||||||| || ||  |||||||||| || ||||||  |||||||||||    
T  40250163 ctagtgattagaattctc-ttttttcaatgagaataagtagggtgttcgaggttcgaaccccgactcctgcatataacaatgcatgttactgccaactga 40250261  T
Q  499 attatgctcacggg 512  Q
      ||||||||||||    
T  40250262 gctatgctcacggg 40250275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 402 - 512
Target Start/End: Complemental strand, 41998205 - 41998095
Alignment:
Q  402 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc-tgcatataataaggcatgtctctgccaactgaat 500  Q
    |||||| |||||||||||||||| ||||||||||||| ||||| |||| |||||||||||   || || ||||||||| |||||||||| |||||| | |    
T  41998205 tagtggctagaattcgccttttt-caatgtgaataagtggggtgtctgtggttcgaactcggcccttgtatataataatgcatgtctctaccaacttagt 41998107  T
Q  501 tatgctcacggg 512  Q
    ||||||||||||    
T  41998106 tatgctcacggg 41998095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 398 - 512
Target Start/End: Complemental strand, 18179440 - 18179325
Alignment:
Q  398 agtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaac 495  Q
    |||||||||| |||||||| ||||||| ||| | |||||||| |||| |||| ||||||||||||    ||||||||||| || ||||||| ||||||||    
T  18179440 agtctagtggctagaattctccttttt-caaggagaataagcagggtgtctggggttcgaactccggtccctgcatataacaatgcatgtccctgccaac 18179342  T
Q  496 tgaattatgctcacggg 512  Q
    ||| |||||||||||||    
T  18179341 tgagttatgctcacggg 18179325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 391 - 512
Target Start/End: Complemental strand, 9931206 - 9931084
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 488  Q
    |||||| |||||||| |||||||||| |||| ||| || ||||||||| ||||| | || ||||||||||||| |   |||||||||||| ||||||| |    
T  9931206 gtcaagtagtctagtagttagaattcaccttcttt-aaggtgaataagtggggtgtttggggttcgaactccagctcttgcatataataatgcatgtccc 9931108  T
Q  489 tgccaactgaattatgctcacggg 512  Q
    ||| |||||| |||||||||||||    
T  9931107 tgctaactgagttatgctcacggg 9931084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 402 - 518
Target Start/End: Original strand, 37262093 - 37262209
Alignment:
Q  402 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacctgcatataataaggcatgtctctgccaactgaatt 501  Q
    |||||||||||||||  | ||||| || ||||||||| |||||||| | |||| ||||   | ||||||||||| || ||||||| |||||||||||| |    
T  37262093 tagtggttagaattcatcattttttaaggtgaataagtggggtatccggggtttgaacctgaccctgcatataacaacgcatgtccctgccaactgaact 37262192  T
Q  502 atgctcacgggaaaaaa 518  Q
    |||||||||| ||||||    
T  37262193 atgctcacggaaaaaaa 37262209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 26701264 - 26701186
Alignment:
Q  16 gttagccgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagcttt 94  Q
    ||||| |||||||||||||||||||| | || |||||||||||| | ||||||||||||||  || |||||||||||||    
T  26701264 gttagtcgatacccaaacaaagtaacgggtctgaccaccatctaatcgtgccataaacaaacgtgacattgttagcttt 26701186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 512
Target Start/End: Original strand, 2643798 - 2643913
Alignment:
Q  398 agtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaac 495  Q
    ||||||||||||||| ||| | |||||| || ||||||||| ||||| |||| ||||| ||| || |||  |||||||||||| ||||||||||||||||    
T  2643798 agtctagtggttagagttcacatttttt-aaggtgaataagtggggtgtctggggttcaaaccccgacccatgcatataataatgcatgtctctgccaac 2643896  T
Q  496 tgaattatgctcacggg 512  Q
    | |  ||||||||||||    
T  2643897 taagctatgctcacggg 2643913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 402 - 508
Target Start/End: Original strand, 9769567 - 9769674
Alignment:
Q  402 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaactgaa 499  Q
    ||||||||||||||| ||||||| ||| ||||||||| ||||| || | ||||||||| ||||  ||| |||||||||| ||||||| |||||||||||     
T  9769567 tagtggttagaattcaccttttt-caaggtgaataagtggggtgtccggggttcgaaccccaatccctacatataataatgcatgtccctgccaactgag 9769665  T
Q  500 ttatgctca 508  Q
     ||||||||    
T  9769666 ctatgctca 9769674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 391 - 512
Target Start/End: Original strand, 9410304 - 9410425
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaa-ctccaacctgcatataataaggcatgtctct 489  Q
    |||||| ||| |||| |||| ||||| ||||||| |||  |||||||| ||||| ||||||||||||| ||| | |||||||||||  | |||||||  |    
T  9410304 gtcaagtagtttagtagttaaaattcaccttttt-caagatgaataagtggggtgtctgaggttcgaatctcaaccctgcatataactatgcatgtcctt 9410402  T
Q  490 gccaactgaattatgctcacggg 512  Q
    |||||||||| ||||||||||||    
T  9410403 gccaactgaactatgctcacggg 9410425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 421 - 509
Target Start/End: Complemental strand, 43020701 - 43020611
Alignment:
Q  421 tttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcac 509  Q
    |||||||| |||||| || ||||| || ||||||||||| ||||||  |||||||||||| ||||||| |||||||| ||  |||||||||    
T  43020701 tttttcaaggtgaatgagtggggtgtccgaggttcgaaccccaacccctgcatataataatgcatgtccctgccaaccgagctatgctcac 43020611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 421 - 512
Target Start/End: Original strand, 9768814 - 9768907
Alignment:
Q  421 tttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcacggg 512  Q
    |||||||| ||||||||| ||||| || | ||||||||| || |||  ||||||||| || ||||||| |||||||||||  ||||||||||||    
T  9768814 tttttcaaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgagctatgctcacggg 9768907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 391 - 509
Target Start/End: Complemental strand, 13941438 - 13941319
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaac-tccaacc-tgcatataataaggcatgtctc 488  Q
    |||||| ||| ||||||||||||||| | |||||||||  |||||||| ||||| || || |||||||| || |||| ||||||||| || |||||||      
T  13941438 gtcaagtagtttagtggttagaattcac-ttttttcaagatgaataagtggggtgtccgaagttcgaacctcgaaccctgcatataacaatgcatgtcct 13941340  T
Q  489 tgccaactgaattatgctcac 509  Q
    ||||||||||| ||| |||||    
T  13941339 tgccaactgaactatactcac 13941319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 498
Target Start/End: Complemental strand, 195152 - 195055
Alignment:
Q  402 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactcca--acctgcatataataaggcatgtctctgccaactga 498  Q
    ||||||||||||||| || |||||||| ||||||||| ||||| |||| ||| |||||  ||   |||||||||||| | ||||||| |||||||||||    
T  195152 tagtggttagaattcacc-tttttcaaggtgaataagtggggtgtctggggtacgaacctcagcccctgcatataattatgcatgtccctgccaactga 195055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 498
Target Start/End: Complemental strand, 5684230 - 5684133
Alignment:
Q  402 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactga 498  Q
    |||| |||| ||||| | |||||| || ||||||||| ||||| |||||||||| | | | ||||  |||||||||||| |||||||||||||||||||    
T  5684230 tagtagttaaaattcacttttttttaaagtgaataagtggggtgtctgaggttcaatc-ctaacccctgcatataataatgcatgtctctgccaactga 5684133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 509
Target Start/End: Original strand, 8758404 - 8758463
Alignment:
Q  451 ggttcgaactccaac-ctgcatataataaggcatgtctctgccaactgaattatgctcac 509  Q
    ||||||||| ||||| || |||||||||| | |||||||| |||||||||||||||||||    
T  8758404 ggttcgaaccccaactctacatataataatgtatgtctctaccaactgaattatgctcac 8758463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 512
Target Start/End: Complemental strand, 42908881 - 42908768
Alignment:
Q  400 tctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactg 497  Q
    ||||||||||||||||| ||||||| |||   ||||||| |||||||| |  |||||||| || |||  ||||||||| || ||||||| ||||||||||    
T  42908881 tctagtggttagaattctccttttt-caagaagaataagtggggtatccggagttcgaaccccgacccctgcatataacaatgcatgtccctgccaactg 42908783  T
Q  498 aattatgctcacggg 512  Q
    |  || |||||||||    
T  42908782 agctaagctcacggg 42908768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 401 - 512
Target Start/End: Original strand, 7906312 - 7906424
Alignment:
Q  401 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactga 498  Q
    ||||||| |||||||| | |||||| || || |||||||||||| ||   ||||||||| ||| ||  ||||||||| || ||||||| || ||||||||    
T  7906312 ctagtggctagaattcacatttttt-aaggtcaataagcggggtgtcccgggttcgaaccccagcccctgcatataacaatgcatgtccctaccaactga 7906410  T
Q  499 attatgctcacggg 512  Q
    | ||||||||||||    
T  7906411 actatgctcacggg 7906424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 466 - 508
Target Start/End: Original strand, 28417330 - 28417372
Alignment:
Q  466 ctgcatataataaggcatgtctctgccaactgaattatgctca 508  Q
    |||||||||| || ||||||||||||||||||| |||||||||    
T  28417330 ctgcatataagaatgcatgtctctgccaactgagttatgctca 28417372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 401 - 512
Target Start/End: Complemental strand, 41677169 - 41677057
Alignment:
Q  401 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacct--gcatataataaggcatgtctctgccaactga 498  Q
    ||||||| |||||||| ||||||| ||| ||||||||| ||||| || |  |||||||| || |||   ||||||||||| | |||||||||||||||||    
T  41677169 ctagtggctagaattcaccttttt-caaggtgaataagtggggtgtccggagttcgaaccccgacccccgcatataataatgaatgtctctgccaactga 41677071  T
Q  499 attatgctcacggg 512  Q
      || |||||||||    
T  41677070 gctacgctcacggg 41677057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 511
Target Start/End: Original strand, 46670895 - 46670941
Alignment:
Q  465 cctgcatataataaggcatgtctctgccaactgaattatgctcacgg 511  Q
    ||||||||||| || ||||||| |||| |||||||||||||||||||    
T  46670895 cctgcatataacaatgcatgtcactgctaactgaattatgctcacgg 46670941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 466 - 512
Target Start/End: Original strand, 51917554 - 51917600
Alignment:
Q  466 ctgcatataataaggcatgtctctgccaactgaattatgctcacggg 512  Q
    ||||||||||||| |||||||| ||||||||||  ||||||||||||    
T  51917554 ctgcatataataatgcatgtctatgccaactgagctatgctcacggg 51917600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 512
Target Start/End: Complemental strand, 1158 - 1036
Alignment:
Q  391 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 488  Q
    |||||| ||| |||||| |||||||| ||||||| ||| ||||||||| ||||| |||| ||||||||| ||| ||  | |||||||| | ||||||| |    
T  1158 gtcaagtagtttagtggctagaattcaccttttt-caaggtgaataagtggggtgtctggggttcgaaccccagcccctacatataattatgcatgtccc 1060  T
Q  489 tgccaactgaattatgctcacggg 512  Q
    | ||||||||  ||||||||||||    
T  1059 taccaactgagctatgctcacggg 1036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 402 - 497
Target Start/End: Original strand, 30885 - 30983
Alignment:
Q  402 tagtggttagaattcgccttttttcaatgtgaataagcggggtatct-gaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactg 497  Q
    ||||| ||||||||| |||||||| || ||||||||| | ||| ||| | ||||||||||||||||  |||||||||||  ||||||| ||||||||||    
T  30885 tagtgattagaattcacctttttttaaagtgaataagtgaggtgtctagtggttcgaactccaacccctgcatataatactgcatgtccctgccaactg 30983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 3485 - 3380
Alignment:
Q  22 cgatacccaaacaaagtaactgttccgaccaccatctacttgtgccataaacaaagttggcattgttagctttcatccaccacaaagaatgatacttaac 121  Q
    |||||||||||||||  ||| | |||||||||||||||  ||  |||||||||||  |||  ||||| ||||||| |||||| || || ||||  |||||    
T  3485 cgatacccaaacaaatcaacgggtccgaccaccatctatgtgaaccataaacaaaaatggtgttgtttgctttcaaccaccaaaaggagtgatgtttaac 3386  T
Q  122 cttttc 127  Q
    ||||||    
T  3385 cttttc 3380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University