View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6731_low_5 (Length: 560)
Name: NF6731_low_5
Description: NF6731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6731_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 42095243 - 42094880
Alignment:
| Q |
1 |
tatatagttaatgcggtggatatttttcgaaggggaaggggcactcataatctcaagttcgactaatgttgtttcaattttactattttcttctcacaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42095243 |
tatatagttaatgcggtggatatttttcgaaggggaaggggcactcataatctcaagttcgactaatgttgtttcaattttactatttccttctcacaca |
42095144 |
T |
|
| Q |
101 |
atttatactcagcannnnnnnnnncgtttctttaggaactgtaacttctcttatagttagtg--actaggtttgagttcatatgttgaagatgatgatgg |
198 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42095143 |
atttatactcagcatatttttttt-gtttctttaggaactgtaacttctcttatagttagtgtgactaggtttgagttcatatgttgaagatgatgatgg |
42095045 |
T |
|
| Q |
199 |
agagtgaagctttgatgagaaggtaatgctttgacaagtttctttccccttcatgtttttcacttttaactctttcct--------------ttttgaaa |
284 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42095044 |
agagtgaagctttgatgagaaggtgatgctttgacaagtttctttccccttcatgtttttcacttttaactctttcctttttctgtcctgttttttgaaa |
42094945 |
T |
|
| Q |
285 |
cattgtgtttgcatcaggcctgccttgatttgaagctgtatatattttgttgttttccacttctt |
349 |
Q |
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| T |
42094944 |
cattgtgtttgcatcaggcttgccttgatttgaagctgtatatattttgttgttttccacttctt |
42094880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 343 - 544
Target Start/End: Original strand, 20456159 - 20456360
Alignment:
| Q |
343 |
acttcttagaggatattggatgctccgggcattgtggatgactattacctcaatttactggattggggaagtgccaatgttcttgcaattggattaggaa |
442 |
Q |
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|||||| ||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20456159 |
acttctgagaggatattggatgctccagacattgtggatgattattacctcaatttactggattggggaagtgccaatgttcttgcaattggattaggaa |
20456258 |
T |
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| Q |
443 |
acacagtgtatttatgggatgcgtcaaacggttccacttcagaactcgttaccgttgatgatgaagatggccctatcacatctgtaagttgggctcctga |
542 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20456259 |
acacagtgtatttatgggatgcatcaaacggttccacttcagaactcgttaccgttgatgatgaagatggccctatcacatctgtaagttgggctccaga |
20456358 |
T |
|
| Q |
543 |
tg |
544 |
Q |
| |
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|| |
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| T |
20456359 |
tg |
20456360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 280
Target Start/End: Complemental strand, 48909302 - 48909189
Alignment:
| Q |
164 |
ctaggtttgagttcatatgttgaagatgatgatggagagtgaagctttgatgagaaggtaatgctttgacaagtttctttccccttcatgtttttcactt |
263 |
Q |
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||||| ||||||||| ||||||||||||||| |||||||| |||||||||||||| | | ||||||| |||||||||||||||| | |||||||| |
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| T |
48909302 |
ctaggcttgagttcaaatgttgaagatgatg---gagagtgaggctttgatgagaagatgaccctttgacgggtttctttccccttcagctatttcactt |
48909206 |
T |
|
| Q |
264 |
ttaactctttccttttt |
280 |
Q |
| |
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|| || |||||||||| |
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| T |
48909205 |
ttttctatttccttttt |
48909189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 343 - 544
Target Start/End: Original strand, 1632234 - 1632435
Alignment:
| Q |
343 |
acttcttagaggatattggatgctccgggcattgtggatgactattacctcaatttactggattggggaagtgccaatgttcttgcaattggattaggaa |
442 |
Q |
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|||||| |||||| |||||||||||| | | | ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | | | |||| |
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| T |
1632234 |
acttctgagaggacattggatgctccagacctagtggatgactattaccttaatttactggattggggaagcgccaatgttcttgcaatagcacttggaa |
1632333 |
T |
|
| Q |
443 |
acacagtgtatttatgggatgcgtcaaacggttccacttcagaactcgttaccgttgatgatgaagatggccctatcacatctgtaagttgggctcctga |
542 |
Q |
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||||||||||||| |||||||| ||||| ||||| ||||||||||| ||||| || || || ||||| ||||||||||| ||||| |||||||||||||| |
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| T |
1632334 |
acacagtgtatttgtgggatgcatcaaatggttctacttcagaacttgttactgtcgaagaagaagacggccctatcacttctgtgagttgggctcctga |
1632433 |
T |
|
| Q |
543 |
tg |
544 |
Q |
| |
|
|| |
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|
| T |
1632434 |
tg |
1632435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 35361100 - 35361044
Alignment:
| Q |
169 |
tttgagttcatatgttgaagatgatgatggagagtgaagctttgatgagaaggtaatgct |
228 |
Q |
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|||||||||||| |||||||||||||| ||||||| ||||||||||||||| ||||| |
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| T |
35361100 |
tttgagttcataggttgaagatgatga---agagtgagactttgatgagaaggtgatgct |
35361044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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