View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6731_low_6 (Length: 538)
Name: NF6731_low_6
Description: NF6731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6731_low_6 |
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| [»] scaffold0025 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 261 - 521
Target Start/End: Original strand, 50494417 - 50494676
Alignment:
| Q |
261 |
actatatttgtgaaacatgttgaaggaaagattttgattgtcgatctgtgtgtggacgatttgatatataaagcaaattgtgaagaattatttgaagatt |
360 |
Q |
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||||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50494417 |
actatatttgtgaaacacgttgaag-aaagatttcaattgtcggtctgtgtgtggacgatttgatatataaagcaaattgtgaagaattgtttgaagatt |
50494515 |
T |
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| Q |
361 |
ttgagtgctccatgaagaagaactttgctatgacagattttgggaaaatgaaatactttcttgaagttgaagtaactcgtaatggaaaaggaattttcat |
460 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50494516 |
ttgagtgctccatgaagaagaactttgctatgacagattttgggaaaatgagatactttcttgaagttgaagtaactcgtaatggaaaaggaattttcat |
50494615 |
T |
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| Q |
461 |
tcatcagcacaagtattctagagaaattttgtctaggtttggaatggaataatgcaacttg |
521 |
Q |
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| T |
50494616 |
tcatcagcacaagtattctagagaaattttgtctaggtttggaatggaataatgcaacttg |
50494676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 50493590 - 50493676
Alignment:
| Q |
181 |
aacaaacatcaagagcatggtatagtaagatttaagtttatttctgtcaagaaaactttgaaaaatgtcatcatgagcatactatat |
267 |
Q |
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| T |
50493590 |
aacaaacaccaagagcatggtatagtaagatttaagtttatttctgtcaagagaactttgaaaaatgtcatcatgagcatactatat |
50493676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 252 - 517
Target Start/End: Original strand, 42971054 - 42971319
Alignment:
| Q |
252 |
catgagcatactatatttgtgaaacatgttgaaggaaagattttgattgtcgatctgtgtgtggacgatttgatatataaagcaaattgtgaagaattat |
351 |
Q |
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| T |
42971054 |
catgagcatactttgtttgtgaaacatgctgaaggaaagtgtttgattgtgagtctgtatgtagatgatctgatatatacaggatattatgaagagttat |
42971153 |
T |
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| Q |
352 |
ttgaagattttgagtgctccatgaagaagaactttgctatgacagattttgggaaaatgaaatactttcttgaagttgaagtaactcgtaatggaaaagg |
451 |
Q |
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|||||| |||| ||| |||||||| | |||| ||||| ||||| ||||| |||| ||| |||||| | | |||||||||| ||| || || |
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| T |
42971154 |
ttgaaggttttatagactctatgaagaaacattttgacatgactgatttggggaagatgaggtaccttcttggattagaagtaactcaagatgccaatgg |
42971253 |
T |
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| Q |
452 |
aattttcattcatcagcacaagtattctagagaaattttgtctaggtttggaatggaataatgcaa |
517 |
Q |
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| T |
42971254 |
aatttttattcatcagcagaaatatgcaagagaaatcttgtccatatttggtatggaagaatgcaa |
42971319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 150 - 420
Target Start/End: Complemental strand, 10781991 - 10781721
Alignment:
| Q |
150 |
tacaagctgagaaaagctttatatgacttgaaacaaacatcaagagcatggtatagtaagatttaagtttatttctgtcaagaaaactttgaaaaatgtc |
249 |
Q |
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|||||| ||| |||||||||||||| || || ||| | ||||||| ||||||||||| ||| ||| ||| ||||||||| |||| |||||||| |||| |
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| T |
10781991 |
tacaagttgaaaaaagctttatatggtttaaagcaagctccaagagcttggtatagtaaaattgaagcttacttctgtcaacaaaagtttgaaaagtgtc |
10781892 |
T |
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| Q |
250 |
atcatgagcatactatatttgtgaaacatgttgaaggaaagattttgattgtcgatctgtgtgtggacgatttgatatataaagcaaattgtgaagaatt |
349 |
Q |
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||||||||||| |||||||||| ||| |||||| || || ||||||||| ||| | ||| || || ||||| | | | |||||||||||| || |
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| T |
10781891 |
cacatgagcatacactatttgtgaagcatactgaagggaaaatattgattgtcagtctatatgtagatgacttgatcttcactggaaattgtgaagagtt |
10781792 |
T |
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| Q |
350 |
atttgaagattttgagtgctccatgaagaagaactttgctatgacagattttgggaaaatgaaatactttc |
420 |
Q |
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| T |
10781791 |
ctttgaagatttcaaatgctccatgaagaagaattttgctatgtcagacttggggaagatgaggtactttc |
10781721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 32 - 284
Target Start/End: Complemental strand, 59492 - 59240
Alignment:
| Q |
32 |
caagagttggaatgtacattagttagatgtgaatagtgcttttctgcatggagagtaagcagaagatgtgtatatagagcagcctgcaggatatcaacaa |
131 |
Q |
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|||||||||||||||| || | |||||||||||||||||||||||||||| || | | ||| ||||||||||||||||||||| ||| |||||| | |
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| T |
59492 |
caagagttggaatgtatatcaactagatgtgaatagtgcttttctgcatggtgaattaattgaaaatgtgtatatagagcagcctgtagggtatcaaaag |
59393 |
T |
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| Q |
132 |
ggagaaagtagtgaggcgtacaagctgagaaaagctttatatgacttgaaacaaacatcaagagcatggtatagtaagatttaagtttatttctgtcaag |
231 |
Q |
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| || | | ||| |||||| ||| |||| |||||| ||| |||||| ||| || |||||||| |||||| ||| || |||| ||||| |
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| T |
59392 |
gaaggagatgacaaggtatacaagttgaagaaagtactatatggcttaaaacaaggtccaattgcttggtatagaaagattgaagcctacttctatcaag |
59293 |
T |
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| Q |
232 |
aaaactttgaaaaatgtcatcatgagcatactatatttgtgaaacatgttgaa |
284 |
Q |
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|||||||||| ||||||| ||||||||||||| ||||||| |||||| ||||| |
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| T |
59292 |
aaaactttgataaatgtcctcatgagcatactctatttgtaaaacatattgaa |
59240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 59176 - 59127
Alignment:
| Q |
348 |
ttatttgaagattttgagtgctccatgaagaagaactttgctatgacaga |
397 |
Q |
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| T |
59176 |
ttatttgaagagtttaaatgctctatgaagaagaattttgctatgacaga |
59127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 168 - 423
Target Start/End: Complemental strand, 46431662 - 46431407
Alignment:
| Q |
168 |
ttatatgacttgaaacaaacatcaagagcatggtatagtaagatttaagtttatttctgtcaagaaaactttgaaaaatgtcatcatgagcatactatat |
267 |
Q |
| |
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||||||| |||||||| || ||||||||||||||||||| || ||| ||| ||||| |||| || ||||| ||||| | |||| | |||||| ||| |
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| T |
46431662 |
ttatatggattgaaacaggcaccaagagcatggtatagtaaaatagaagcttacttctgcaaagagaattttgagaaatgccctcattaacatactttat |
46431563 |
T |
|
| Q |
268 |
ttgtgaaacatgttgaaggaaagattttgattgtcgatctgtgtgtggacgatttgatatataaagcaaattgtgaagaattatttgaagattttgagtg |
367 |
Q |
| |
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|||| || |||| |||| ||||| || ||||| | ||| |||||| ||| ||||||||| | ||||||||||| |||| |||| || || |||| |
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| T |
46431562 |
ttgtaaagcatgctgaaaacaagatcttaattgttagtttgtatgtggatgatctgatatatactggaaattgtgaagtattaattgatgacttcaagtg |
46431463 |
T |
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| Q |
368 |
ctccatgaagaagaactttgctatgacagattttgggaaaatgaaatactttcttg |
423 |
Q |
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| T |
46431462 |
ttctatgaagaaaaactttgtcatgactgatttgggaaaaatgagatactttcttg |
46431407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 435
Target Start/End: Complemental strand, 40610586 - 40610527
Alignment:
| Q |
376 |
agaagaactttgctatgacagattttgggaaaatgaaatactttcttgaagttgaagtaa |
435 |
Q |
| |
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||||||| ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |
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| T |
40610586 |
agaagaattttgctatgacagatttgggaaaaatgagatactttcttgaagtagaagtaa |
40610527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 7849894 - 7849802
Alignment:
| Q |
192 |
agagcatggtatagtaagatttaagtttatttctgtcaagaaaactttgaaaaatgtcatcatgagcatactatatttgtgaaacatgttgaa |
284 |
Q |
| |
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||||| ||||||||||| || ||| ||||||||| ||||||| ||||||||||| | |||||| |||||| | ||||| || ||||||||| |
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| T |
7849894 |
agagcctggtatagtaaaatagaagcttatttctgcaaagaaaattttgaaaaatgccctcatgaacatactctgtttgtaaagcatgttgaa |
7849802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 7850031 - 7849971
Alignment:
| Q |
55 |
tagatgtgaatagtgcttttctgcatggagagtaagcagaagatgtgtatatagagcagcc |
115 |
Q |
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|||||||||| ||||||||||||||||| || | || |||||||||||| | |||||||| |
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|
| T |
7850031 |
tagatgtgaagagtgcttttctgcatggtgaattagtggaagatgtgtatgttgagcagcc |
7849971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 29942951 - 29942859
Alignment:
| Q |
36 |
agttggaatgtacattagttagatgtgaatagtgcttttctgcatggagagtaagcagaagatgtgtatatagagcagcctgcaggatatcaa |
128 |
Q |
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|||||||||||| || | |||||||||| |||||||| ||||||| ||| | | || |||||||||||||||||| |||||| |||||| |
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| T |
29942951 |
agttggaatgtatataaactagatgtgaagagtgctttcttgcatggtgagctaactgagaatgtgtatatagagcagcttgcagggtatcaa |
29942859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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