View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6738_low_10 (Length: 398)
Name: NF6738_low_10
Description: NF6738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6738_low_10 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 37443991 - 37443594
Alignment:
| Q |
1 |
tagtattccactagttacaatgtttttattttccttacccctccctttctatatctgcttcatcctttcaatgaagtatccctctgtagatggagataca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37443991 |
tagtattccactagttacaatgtttttattttccttacccctccctttctatatctgcttcatcctttcaatgaagtatccctctgtagatggagataca |
37443892 |
T |
|
| Q |
101 |
ttgcatggctatgtgtcgtccgttatgaagtacttacagagacacaaacacctaatacaaaactgacactgacatagcataaaaatttgagaaaataaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37443891 |
ttgcatggctatgtgtcgtccgttatgaagtacttacagagacacaaacacctaatacaaaactgacactgacatagcataaaaatttgagaaaataaaa |
37443792 |
T |
|
| Q |
201 |
gtaattgaatcgaactacacacattagtgttggacaccgagttggacatgtctacataggttactggaatgaggaaagaaggtgatatacatgctttcgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37443791 |
gtaattgaatcgaactacacacattagtgttggacaccgagttggacatgtctacataggttactggaatgaggaaagaaggtgatatacatgctttagt |
37443692 |
T |
|
| Q |
301 |
gatatttatgattcacaattgtattttctattgccattgcactcccaatgttttaactgttctagtgaacctgttcgttccttaatcaagaggagtcc |
398 |
Q |
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| T |
37443691 |
gatatttatgattcacaattgtattttctattgccattgcactcccaatgttttaactgttctagtgaacctgtttgttccttaatcaagaggagtcc |
37443594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 286 - 398
Target Start/End: Complemental strand, 37707957 - 37707845
Alignment:
| Q |
286 |
tatacatgctttcgtgatatttatgattcacaattgtattttctattgccattgcactcccaatgttttaactgttctagtgaacctgttcgttccttaa |
385 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
37707957 |
tatacatgctttagtgatagttatgattcacaattgtattttctattgccattgcactcccaatgttttaactgttctagcgaacctgtttgttccttaa |
37707858 |
T |
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| Q |
386 |
tcaagaggagtcc |
398 |
Q |
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||||||||||||| |
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| T |
37707857 |
tcaagaggagtcc |
37707845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 37708076 - 37707964
Alignment:
| Q |
111 |
atgtgtcgtccgttatgaagtacttacagagacacaaacacctaatacaaaactgacactgacatagcataaaaatttgagaaaat--aaaagtaattga |
208 |
Q |
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|||| ||||| |||||||||||| |||||||||||||||||| ||||||| | |||||||||||||| ||||||| |||||||||| |||||||||||| |
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| T |
37708076 |
atgtttcgtcggttatgaagtacatacagagacacaaacaccgaatacaacattgacactgacatagtataaaaaattgagaaaataaaaaagtaattga |
37707977 |
T |
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| Q |
209 |
atcgaactacaca |
221 |
Q |
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||||||| ||||| |
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| T |
37707976 |
atcgaacaacaca |
37707964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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