View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6738_low_11 (Length: 380)

Name: NF6738_low_11
Description: NF6738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6738_low_11
NF6738_low_11
[»] chr5 (17 HSPs)
chr5 (15-367)||(4323922-4324265)
chr5 (28-95)||(34338389-34338456)
chr5 (37-95)||(21077562-21077620)
chr5 (22-67)||(380434-380479)
chr5 (22-95)||(22176388-22176461)
chr5 (28-68)||(19513033-19513073)
chr5 (28-75)||(6866889-6866936)
chr5 (28-75)||(30509615-30509662)
chr5 (28-75)||(30549955-30550002)
chr5 (28-59)||(38358008-38358039)
chr5 (133-191)||(29572523-29572581)
chr5 (133-191)||(29573900-29573958)
chr5 (133-191)||(29575277-29575335)
chr5 (133-191)||(29576654-29576712)
chr5 (133-191)||(29578031-29578089)
chr5 (133-191)||(29579408-29579466)
chr5 (31-75)||(35122277-35122321)
[»] chr3 (13 HSPs)
chr3 (27-290)||(30792794-30793057)
chr3 (36-290)||(30802660-30802913)
chr3 (28-95)||(7164005-7164072)
chr3 (22-268)||(17271244-17271490)
chr3 (28-75)||(36709435-36709482)
chr3 (28-75)||(45684701-45684748)
chr3 (28-68)||(14864033-14864073)
chr3 (28-68)||(52250692-52250732)
chr3 (303-358)||(30793093-30793148)
chr3 (28-95)||(53941808-53941875)
chr3 (22-95)||(14307713-14307786)
chr3 (28-68)||(8130483-8130523)
chr3 (28-68)||(21740091-21740131)
[»] chr6 (14 HSPs)
chr6 (28-95)||(10362638-10362705)
chr6 (28-95)||(32186188-32186255)
chr6 (28-75)||(33805305-33805352)
chr6 (22-95)||(19350449-19350522)
chr6 (22-95)||(26514229-26514302)
chr6 (28-68)||(2923403-2923443)
chr6 (28-68)||(23065614-23065654)
chr6 (28-95)||(25350727-25350794)
chr6 (28-137)||(11060430-11060539)
chr6 (28-61)||(21549387-21549420)
chr6 (32-68)||(14686580-14686616)
chr6 (28-68)||(17078758-17078798)
chr6 (28-68)||(18051017-18051057)
chr6 (28-68)||(29056051-29056091)
[»] chr4 (14 HSPs)
chr4 (22-96)||(29328339-29328414)
chr4 (169-264)||(48497761-48497856)
chr4 (28-96)||(9690926-9690994)
chr4 (32-92)||(36183045-36183105)
chr4 (28-67)||(53810374-53810413)
chr4 (32-96)||(41382477-41382541)
chr4 (32-92)||(56337072-56337132)
chr4 (28-75)||(26694453-26694500)
chr4 (28-79)||(42778759-42778810)
chr4 (32-95)||(43516320-43516383)
chr4 (28-95)||(49925835-49925902)
chr4 (30-68)||(42953064-42953102)
chr4 (30-92)||(52617435-52617497)
chr4 (28-68)||(4524194-4524234)
[»] chr7 (10 HSPs)
chr7 (29-95)||(23887589-23887655)
chr7 (29-95)||(23898765-23898831)
chr7 (28-75)||(18671695-18671742)
chr7 (28-68)||(36227718-36227758)
chr7 (28-75)||(18767933-18767980)
chr7 (28-75)||(34457726-34457773)
chr7 (36-95)||(41805319-41805378)
chr7 (22-95)||(27218684-27218757)
chr7 (28-68)||(17056061-17056101)
chr7 (28-92)||(25018886-25018950)
[»] chr8 (11 HSPs)
chr8 (28-95)||(25193593-25193660)
chr8 (28-95)||(29721478-29721545)
chr8 (32-92)||(37165693-37165753)
chr8 (36-95)||(12332360-12332419)
chr8 (28-75)||(44082580-44082627)
chr8 (28-86)||(4331704-4331762)
chr8 (30-68)||(24794289-24794327)
chr8 (28-137)||(17659294-17659403)
chr8 (28-68)||(6901441-6901481)
chr8 (32-96)||(12341071-12341135)
chr8 (28-68)||(36157686-36157726)
[»] chr2 (10 HSPs)
chr2 (33-95)||(33583924-33583986)
chr2 (28-92)||(43310767-43310831)
chr2 (32-95)||(11196856-11196919)
chr2 (28-95)||(26146720-26146787)
chr2 (28-75)||(28400118-28400165)
chr2 (28-79)||(1380603-1380654)
chr2 (29-92)||(10689063-10689125)
chr2 (28-75)||(35488362-35488409)
chr2 (22-59)||(6823952-6823989)
chr2 (15-55)||(32191610-32191650)
[»] chr1 (7 HSPs)
chr1 (27-95)||(19014551-19014618)
chr1 (21-95)||(40563119-40563193)
chr1 (22-94)||(28358396-28358468)
chr1 (32-95)||(45795711-45795774)
chr1 (29-95)||(20987668-20987734)
chr1 (23-64)||(5809117-5809158)
chr1 (28-68)||(22191350-22191390)
[»] scaffold0112 (1 HSPs)
scaffold0112 (36-68)||(15226-15258)
[»] scaffold0912 (1 HSPs)
scaffold0912 (28-75)||(2441-2488)
[»] scaffold0026 (1 HSPs)
scaffold0026 (22-68)||(67612-67658)


Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 367
Target Start/End: Original strand, 4323922 - 4324265
Alignment:
Q  15 tggtgttgaggtagggaggttggaggtgggggg-ccggagtgtttcttcttggtgacgggagatagcaaaaattagggatggtagagtagatgttggtgg 113  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||          ||    
T  4323922 tggtgttgaggtagggaggttggaggtgggggggccggagtgtttcttcttggtgacgggagatagcataaattagggatggtagagt----------gg 4324011  T
Q  114 aggttggtttgaggagagtgtgtcccgtagggtgggagatggagctgacacttctttttggtatgaccggtggttaggtgagactcctttcattgtgcgg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4324012 aggttggtttgaggagagtgtgtcccgtagggtgggagatggagctgacacttctttttggtatgaccggtggttaggtgagactcctttcagtgtgcgg 4324111  T
Q  214 tttcggcgcttatttaagttaaccttaaataattcgtgttcggtcgccactatgtttcgtcttggttgggaggagggaggttgtgggcttgggaggagga 313  Q
    ||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4324112 tttcggcacttatttaagttaaccttaaataggtcgtgttcggtcgccactatgtttcgtcttggttgggaggagggaggttgtgggcttgggaggagga 4324211  T
Q  314 tctagtagcgaagtgtaggactttacttaatattgttgttttgcagcctgatgt 367  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  4324212 tctagtagcggagtgtaggactttacttaatattgttgttttgcagcctaatgt 4324265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 34338456 - 34338389
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||||||||||||| ||||||||||||||||||||||||||  ||| |||||| || | |||||||||    
T  34338456 gggaggttggaggttgggggccggagtgtttcttcttggtggagggggatagcgaagactagggatgg 34338389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 21077620 - 21077562
Alignment:
Q  37 gaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    ||||| ||||||||||||| |||||||||||| || |||||||| |||||||| |||||    
T  21077620 gaggttgggggccggagtggttcttcttggtggcgagagatagctaaaattagagatgg 21077562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 380479 - 380434
Alignment:
Q  22 gaggtagggaggttggaggtggggggccggagtgtttcttcttggt 67  Q
    |||| ||||||||||||||| ||||||||||||| |||||||||||    
T  380479 gaggcagggaggttggaggttgggggccggagtggttcttcttggt 380434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 22176388 - 22176461
Alignment:
Q  22 gaggtagggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||| ||||||||||| ||| |||||||||||||| |||||||||||   ||| ||||| || |||||||||||    
T  22176388 gaggcagggaggttggcggttgggggccggagtgtctcttcttggtggaaggaaatagcgaagattagggatgg 22176461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 19513033 - 19513073
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  19513033 gggaggttggaggtggggggccggagttgttcttcttggtg 19513073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 6866936 - 6866889
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggag 75  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||||    
T  6866936 gggaggttggaggtggggggccagagtggttcttcgtggtggcgggag 6866889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 30509615 - 30509662
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggag 75  Q
    ||||| |||||||||||||||||||||  |||||||||||| ||||||    
T  30509615 gggagattggaggtggggggccggagttgttcttcttggtggcgggag 30509662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 30549955 - 30550002
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggag 75  Q
    ||||| |||||||||||||||||||||  |||||||||||| ||||||    
T  30549955 gggagattggaggtggggggccggagttgttcttcttggtggcgggag 30550002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 38358039 - 38358008
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttc 59  Q
    ||||||||||||||||||||||||||||||||    
T  38358039 gggaggttggaggtggggggccggagtgtttc 38358008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 29572523 - 29572581
Alignment:
Q  133 gtgtcccgtagggtgggagatggagctgacacttctttttggtatgaccggtggttagg 191  Q
    |||||||||| |||||||||||| ||||||||||  ||||||| |||  ||||||||||    
T  29572523 gtgtcccgtaaggtgggagatggggctgacactttcttttggtttgataggtggttagg 29572581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 29573900 - 29573958
Alignment:
Q  133 gtgtcccgtagggtgggagatggagctgacacttctttttggtatgaccggtggttagg 191  Q
    |||||||||| |||||||||||| ||||||||||  ||||||| |||  ||||||||||    
T  29573900 gtgtcccgtaaggtgggagatggggctgacactttcttttggtttgataggtggttagg 29573958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 29575277 - 29575335
Alignment:
Q  133 gtgtcccgtagggtgggagatggagctgacacttctttttggtatgaccggtggttagg 191  Q
    |||||||||| |||||||||||| ||||||||||  ||||||| |||  ||||||||||    
T  29575277 gtgtcccgtaaggtgggagatggggctgacactttcttttggtttgataggtggttagg 29575335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 29576654 - 29576712
Alignment:
Q  133 gtgtcccgtagggtgggagatggagctgacacttctttttggtatgaccggtggttagg 191  Q
    |||||||||| |||||||||||| ||||||||||  ||||||| |||  ||||||||||    
T  29576654 gtgtcccgtaaggtgggagatggggctgacactttcttttggtttgataggtggttagg 29576712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 29578031 - 29578089
Alignment:
Q  133 gtgtcccgtagggtgggagatggagctgacacttctttttggtatgaccggtggttagg 191  Q
    |||||||||| |||||||||||| ||||||||||  ||||||| |||  ||||||||||    
T  29578031 gtgtcccgtaaggtgggagatggggctgacactttcttttggtttgataggtggttagg 29578089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 29579408 - 29579466
Alignment:
Q  133 gtgtcccgtagggtgggagatggagctgacacttctttttggtatgaccggtggttagg 191  Q
    |||||||||| |||||||||||| ||||||||||  ||||||| |||  ||||||||||    
T  29579408 gtgtcccgtaaggtgggagatggggctgacactttcttttggtttgataggtggttagg 29579466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 35122277 - 35122321
Alignment:
Q  31 aggttggaggtggggggccggagtgtttcttcttggtgacgggag 75  Q
    ||||||||||||||||||| ||||  |||||||||||| ||||||    
T  35122277 aggttggaggtggggggccagagttgttcttcttggtggcgggag 35122321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 27 - 290
Target Start/End: Original strand, 30792794 - 30793057
Alignment:
Q  27 agggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatggtagagtagatgttggtggaggttggtttgag 126  Q
    ||||||||||||| | ||||| |||| ||||||||||||||  |||||||| ||||||||||||||||||||||  || ||||| |||||||||||||||    
T  30792794 agggaggttggagattgggggtcggaatgtttcttcttggtagcgggagattgcaaaaattagggatggtagaggcgacgttgggggaggttggtttgag 30792893  T
Q  127 gagagtgtgtcccgtagggtgggagatggagctgacacttctttttggtatgaccggtggttaggtgagactcctttcattgtgcggtttcggcgcttat 226  Q
    |||| ||| || ||||| ||||| |||| |||||| || |||||||||||||| |||||| |||||||||||||||| | |||||||||| ||| |||||    
T  30792894 gagaatgtatcacgtagagtgggggatgaagctgatacatctttttggtatgatcggtggataggtgagactccttttagtgtgcggtttaggcacttat 30792993  T
Q  227 ttaagttaaccttaaataattcgtgttcggtcgccactatgtttcgtcttggttgggaggaggg 290  Q
    || | ||| | |||||||| || || ||||||||||||||||||| ||||||||||||||||||    
T  30792994 ttgatttatctttaaataagtcatgctcggtcgccactatgtttcatcttggttgggaggaggg 30793057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 36 - 290
Target Start/End: Original strand, 30802660 - 30802913
Alignment:
Q  36 ggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatggtagagtagatgttggtggaggttggtttgaggagagtgtg 135  Q
    |||||| ||||| |||| ||||||||||||||  |||||||| ||||||||||||||||||||||  || ||||| ||||||||||||||||||| |||     
T  30802660 ggaggttgggggtcggaatgtttcttcttggtagcgggagattgcaaaaattagggatggtagaggcgacgttgg-ggaggttggtttgaggagaatgta 30802758  T
Q  136 tcccgtagggtgggagatggagctgacacttctttttggtatgaccggtggttaggtgagactcctttcattgtgcggtttcggcgcttatttaagttaa 235  Q
    || ||||| ||||| |||| |||||| || |||||||||||||| |||||| |||||||||||||||| | |||||||||| ||| ||||||| | |||     
T  30802759 tcacgtagagtgggggatgaagctgatacatctttttggtatgatcggtggataggtgagactccttttagtgtgcggtttaggcacttatttgatttat 30802858  T
Q  236 ccttaaataattcgtgttcggtcgccactatgtttcgtcttggttgggaggaggg 290  Q
    | |||||||| || || ||||||||||||||||||| ||||||||||||||||||    
T  30802859 ctttaaataagtcatgctcggtcgccactatgtttcatcttggttgggaggaggg 30802913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 7164072 - 7164005
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||||||| ||||| |||||||||||||||||||||||||| || |||||| | |||||| |||||||    
T  7164072 gggaggttagaggttgggggccggagtgtttcttcttggtggcgagagatatctaaaatttgggatgg 7164005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 268
Target Start/End: Original strand, 17271244 - 17271490
Alignment:
Q  22 gaggtagggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatggtagagtagatgttggtggaggttggt 121  Q
    |||| ||||||||| ||||| |||||   ||||||||||||||||||  ||||||| ||||||||||| |||||||| |  || ||||| | ||| ||||    
T  17271244 gaggcagggaggttagaggttgggggtaagagtgtttcttcttggtggagggagatcgcaaaaattagagatggtagtggggaggttggggaagggtggt 17271343  T
Q  122 ttgaggagagtgtgtcccgtagggtgggagatggagctgacacttctttttggtatgaccggtggttaggtgagactcctttcattgtgcggtttcggcg 221  Q
    | |  ||| |||| ||  ||  |||||| ||||||    | ||||  ||||||||||||||||| ||||| ||||||||| |   |||||| ||  |  |    
T  17271344 tcgtagagggtgtttcgtgtcaggtgggggatggattaaatactttcttttggtatgaccggtgattaggcgagactcctgtatgtgtgcgattcagttg 17271443  T
Q  222 cttatttaagttaaccttaaataattcgtgttcggtcgccactatgt 268  Q
    ||||||| ||||| |||||||| | || || || |||||||||||||    
T  17271444 cttatttgagttatccttaaatgagtcatgctcagtcgccactatgt 17271490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 36709482 - 36709435
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggag 75  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  36709482 gggaggttggaggtggggggccggagtgtttctttgtggtggcgggag 36709435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 45684748 - 45684701
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggag 75  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  45684748 gggaggttggaggtggggggccggagtgtttctttgtggtggcgggag 45684701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 14864033 - 14864073
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  14864033 gggaggttggaggtggggggccggagttgttcttcttggtg 14864073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 52250692 - 52250732
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  52250692 gggaggttggaggttgggggccggagtggttcttcttggtg 52250732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 358
Target Start/End: Original strand, 30793093 - 30793148
Alignment:
Q  303 tgggaggaggatctagtagcgaagtgtaggactttacttaatattgttgttttgca 358  Q
    |||||||||||| |||||||| |||||||| |||||||| | | ||||||||||||    
T  30793093 tgggaggaggatttagtagcggagtgtagggctttacttcacactgttgttttgca 30793148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 53941875 - 53941808
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||||||||| ||| ||||||||||||| ||||| || |||  |||||||||| || |||||||||||    
T  53941875 gggaggttggtggtagggggccggagtgattctttttagtggagggagatagcgaagattagggatgg 53941808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 14307786 - 14307713
Alignment:
Q  22 gaggtagggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||| |||||| |||||| | |||||||||||||| ||  |||||||  |||||||||| || |||||||||||    
T  14307786 gaggcagggagattggagtttgggggccggagtgtgtcaccttggtggagggagatagcgaagattagggatgg 14307713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 8130523 - 8130483
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||||||| ||||||||||||| ||||| ||||||    
T  8130523 gggaggttggaggttgggggccggagtggttctttttggtg 8130483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 21740091 - 21740131
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||||||| ||||||||||||  ||||||||||||    
T  21740091 gggaggttggaggttgggggccggagttgttcttcttggtg 21740131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 10362705 - 10362638
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| |||||    
T  10362705 gggaggttggaggtggggggccggagtggttcttcttggtggcgggagatagccaaaattagagatgg 10362638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 32186255 - 32186188
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||||||||||||| ||||||||||||| ||||||||||||  ||||| |||  || |||||||||||    
T  32186255 gggaggttggaggttgggggccggagtgcttcttcttggtggagggaggtagtgaagattagggatgg 32186188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 33805352 - 33805305
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggag 75  Q
    |||||||||||||||||||||||||||  |||||||||||| ||||||    
T  33805352 gggaggttggaggtggggggccggagttgttcttcttggtggcgggag 33805305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 19350522 - 19350449
Alignment:
Q  22 gaggtagggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||| ||||||||||||||| |||||||||||||| || ||||||||   |||| |||| || |||||||||||    
T  19350522 gaggcagggaggttggaggttgggggccggagtgtatcatcttggtggaaggaggtagcgaagattagggatgg 19350449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 26514302 - 26514229
Alignment:
Q  22 gaggtagggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||| |||||| |||||||| ||||||||||||| ||||  ||||||  |||||||||| || |||||||||||    
T  26514302 gaggcagggagtttggaggttgggggccggagtggttctatttggtggagggagatagcgaagattagggatgg 26514229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 2923443 - 2923403
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  2923443 gggaggttggaggttgggggacggagtgtttcttcttggtg 2923403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 23065614 - 23065654
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  23065614 gggaggttggaggtggggggccggagtggttcttcgtggtg 23065654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 25350794 - 25350727
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||||||||| ||| ||||||||||||| ||||| |||||   |||||||||| || |||||||||||    
T  25350794 gggaggttggtggtagggggccggagtgattctttttggttgagggagatagcgaagattagggatgg 25350727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 11060430 - 11060539
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatggtagagtagatgttggtggaggttggtttgagg 127  Q
    |||||||||||||| ||||||||||||  ||||||||||||  ||||| |||     |||||||| ||| |||  ||  |||||||||| ||||||| ||    
T  11060430 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattagggacggtggaggtgacattggtggaggctggtttgggg 11060529  T
Q  128 agagtgtgtc 137  Q
    || |||||||    
T  11060530 agtgtgtgtc 11060539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 21549420 - 21549387
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttctt 61  Q
    |||||||||||||||||||| |||||||||||||    
T  21549420 gggaggttggaggtggggggtcggagtgtttctt 21549387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 14686580 - 14686616
Alignment:
Q  32 ggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  14686580 ggttggaggtagggggccggagtgtttcatcttggtg 14686616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 17078758 - 17078798
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||||||| ||||||||||||  ||||||||||||    
T  17078758 gggaggttggaggttgggggccggagttgttcttcttggtg 17078798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 18051017 - 18051057
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||||||| ||||||||||||  ||||||||||||    
T  18051017 gggaggttggaggttgggggccggagttgttcttcttggtg 18051057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 29056091 - 29056051
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||| ||| |||||||||||||||||||| |||||    
T  29056091 gggaggttggcggttgggggccggagtgtttcttcgtggtg 29056051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 29328339 - 29328414
Alignment:
Q  22 gaggtagggaggttggaggtgggg-ggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatggt 96  Q
    ||||| |||||||||||||||| | |||||||||| ||||| |||||| ||||||||| |||||||||||||||||    
T  29328339 gaggtggggaggttggaggtggagaggccggagtggttctttttggtggcgggagatatcaaaaattagggatggt 29328414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 48497761 - 48497856
Alignment:
Q  169 ttttggtatgaccggtggttaggtgagactcctttcattgtgcggtttcggcgcttatttaagttaaccttaaataattcgtgttcggtcgccact 264  Q
    |||||||||||  ||||||||||||||||||||||   |||||||||| | ||||||||| | |||  ||||||||| ||||| ||||||||||||    
T  48497761 ttttggtatgataggtggttaggtgagactcctttatgtgtgcggtttagccgcttatttgaattattcttaaataagtcgtgctcggtcgccact 48497856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 9690994 - 9690926
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatggt 96  Q
    |||||||||||||| ||||||||||||||||||  ||||||  |||||||||| || ||||||||||||    
T  9690994 gggaggttggaggttgggggccggagtgtttctcattggtggagggagatagcgaagattagggatggt 9690926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 36183105 - 36183045
Alignment:
Q  32 ggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattaggga 92  Q
    |||||||||| |||||||||||||||||| |||||||  |||||||||| || ||||||||    
T  36183105 ggttggaggttgggggccggagtgtttctacttggtggagggagatagcgaagattaggga 36183045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 53810413 - 53810374
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggt 67  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  53810413 gggaggttggaggtggggggccggagtgattcttcttggt 53810374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 41382541 - 41382477
Alignment:
Q  32 ggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatggt 96  Q
    |||||||||| |||||||||||||||||| |||||||  | ||| |||| ||||||| |||||||    
T  41382541 ggttggaggttgggggccggagtgtttctacttggtggagagagttagcgaaaattaaggatggt 41382477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 56337072 - 56337132
Alignment:
Q  32 ggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattaggga 92  Q
    |||||||||| ||||| |||||||||||| |||||||  |||||||||| || ||||||||    
T  56337072 ggttggaggttgggggtcggagtgtttctacttggtggagggagatagcgaagattaggga 56337132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 26694500 - 26694453
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggag 75  Q
    ||||||||||||||||||||| ||||||||||||  ||||| ||||||    
T  26694500 gggaggttggaggtggggggctggagtgtttctttgtggtggcgggag 26694453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 42778810 - 42778759
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatag 79  Q
    |||||||||||||| ||||||||||||  ||||||||||||  |||||||||    
T  42778810 gggaggttggaggttgggggccggagttgttcttcttggtggagggagatag 42778759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 43516320 - 43516383
Alignment:
Q  32 ggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||||||||| |||||| |||||||||| |||||||| |||||  |||| || |||||||||||    
T  43516320 ggttggaggttgggggcaggagtgtttcatcttggtggcgggaagtagcgaagattagggatgg 43516383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 49925835 - 49925902
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||||||||||||| ||||||||||||  |||||||||||| |||||| | |  || |||||||||||    
T  49925835 gggaggttggaggttgggggccggagttgttcttcttggtggcgggaggtggggaagattagggatgg 49925902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 42953064 - 42953102
Alignment:
Q  30 gaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  42953064 gaggttggaggtggggggccggagttgttcttcttggtg 42953102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 52617435 - 52617497
Alignment:
Q  30 gaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattaggga 92  Q
    ||||||||||||  | |||||||||||||| ||||||||  |||||||||| || ||||||||    
T  52617435 gaggttggaggttagaggccggagtgtttcatcttggtggagggagatagcgaagattaggga 52617497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 4524194 - 4524234
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||||||| ||||||||||||  ||||||||||||    
T  4524194 gggaggttggaggttgggggccggagttgttcttcttggtg 4524234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 23887655 - 23887589
Alignment:
Q  29 ggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    ||||||||||||| ||||| ||||||||||||||||||||  |||||||||| || |||||||||||    
T  23887655 ggaggttggaggttgggggtcggagtgtttcttcttggtggagggagatagcgaagattagggatgg 23887589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 23898831 - 23898765
Alignment:
Q  29 ggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    ||||||||||||| ||||| ||||||||||||||||||||  |||||||||| || |||||||||||    
T  23898831 ggaggttggaggttgggggtcggagtgtttcttcttggtggagggagatagcgaagattagggatgg 23898765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 18671742 - 18671695
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggag 75  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  18671742 gggaggttggaggtggggggccggagtgtttcttcatggtggcgggag 18671695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 36227718 - 36227758
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  36227718 gggaggttggaggtggggggccggagtgattcttcttggtg 36227758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 18767980 - 18767933
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggag 75  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  18767980 gggaggttggaggtggggggccggagtgtttctttgtggtggcgggag 18767933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 34457726 - 34457773
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggag 75  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  34457726 gggaggttggaggtggggggccggagtgtttctttgtggtggcgggag 34457773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 41805319 - 41805378
Alignment:
Q  36 ggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||||| ||||||||||||| |||||||||||| || ||||| || || |||||||||||    
T  41805319 ggaggttgggggccggagtggttcttcttggtggcgagagatcgctaatattagggatgg 41805378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 27218684 - 27218757
Alignment:
Q  22 gaggtagggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||| ||||||||||| ||| |||||||||||||| || ||||||||   |||| |||| || |||||||||||    
T  27218684 gaggcagggaggttggcggttgggggccggagtgtatcatcttggtggaaggaggtagcgaagattagggatgg 27218757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 17056101 - 17056061
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||| ||| |||||||||||||||||||| |||||    
T  17056101 gggaggttggtggttgggggccggagtgtttcttcgtggtg 17056061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 25018886 - 25018950
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattaggga 92  Q
    |||||||||||||| ||||| || |||| |||||||||||| || ||||| || || ||||||||    
T  25018886 gggaggttggaggttgggggtcgaagtggttcttcttggtggcgagagatcgctaatattaggga 25018950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 25193660 - 25193593
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||||||||||||| ||||||||||||| ||||| ||||||  |||||||||| || |||||||||||    
T  25193660 gggaggttggaggtagggggccggagtgattcttattggtggagggagatagcgaagattagggatgg 25193593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 29721478 - 29721545
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||||||||||||| |||||||||||||| |||| ||||||  |||||||||| || |||||||||||    
T  29721478 gggaggttggaggtagggggccggagtgtctcttattggtggagggagatagcgaagattagggatgg 29721545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 37165693 - 37165753
Alignment:
Q  32 ggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattaggga 92  Q
    |||||||||| |||||||||||||||||| |||||||  |||||||||| || ||||||||    
T  37165693 ggttggaggttgggggccggagtgtttctacttggtggagggagatagcgaagattaggga 37165753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 12332419 - 12332360
Alignment:
Q  36 ggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||||| ||||||||||||| |||||||||||| || ||||| || || |||||||||||    
T  12332419 ggaggttgggggccggagtggttcttcttggtggcgagagatcgctaatattagggatgg 12332360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 44082580 - 44082627
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggag 75  Q
    |||||||||||||||||||| |||||||||||||  ||||| ||||||    
T  44082580 gggaggttggaggtggggggtcggagtgtttctttgtggtggcgggag 44082627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 4331762 - 4331704
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaat 86  Q
    |||||||||||||| |||| |||||||||||||||| ||||  ||||| |||| |||||    
T  4331762 gggaggttggaggttggggaccggagtgtttcttctcggtggagggaggtagcgaaaat 4331704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 24794327 - 24794289
Alignment:
Q  30 gaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  24794327 gaggttggaggtggggggccggagttgttcttcttggtg 24794289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 17659403 - 17659294
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatggtagagtagatgttggtggaggttggtttgagg 127  Q
    |||||||||||||| ||||||||||||  ||||||||||||  ||||| |||     |||||||| ||| |||  ||  |||||||||| ||||||| ||    
T  17659403 gggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattagggacggtggaggtgacattggtggaggctggtttgggg 17659304  T
Q  128 agagtgtgtc 137  Q
    || |||||||    
T  17659303 agtgtgtgtc 17659294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 6901481 - 6901441
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||||||| |||||||| |||| ||||||||||||    
T  6901481 gggaggttggaggttgggggccgaagtggttcttcttggtg 6901441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 12341135 - 12341071
Alignment:
Q  32 ggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatggt 96  Q
    |||||||||| ||| ||||||||||||||  ||||||  || ||||||| || ||||||||||||    
T  12341135 ggttggaggttgggagccggagtgtttctaattggtggaggtagatagcgaagattagggatggt 12341071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 36157726 - 36157686
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||||||| ||||||||||||  ||||||||||||    
T  36157726 gggaggttggaggttgggggccggagttgttcttcttggtg 36157686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 33583924 - 33583986
Alignment:
Q  33 gttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    ||||||||| ||||| ||||||||||||||||||||  |||||||||| || |||||||||||    
T  33583924 gttggaggttgggggtcggagtgtttcttcttggtggagggagatagcgaagattagggatgg 33583986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 43310831 - 43310767
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattaggga 92  Q
    |||||||||||||| ||||||||||||| |||||||||||| || ||||| || || ||||||||    
T  43310831 gggaggttggaggttgggggccggagtggttcttcttggtggcgagagatcgctaatattaggga 43310767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 11196919 - 11196856
Alignment:
Q  32 ggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||||||||| ||||||||||||||||| |||||||| |||||  |||| || |||||||||||    
T  11196919 ggttggaggttgggggccggagtgtttcatcttggtggcgggaagtagctaagattagggatgg 11196856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 26146787 - 26146720
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||||||||||||| ||||||||||||| || ||||||||| || ||||| || || |||||||||||    
T  26146787 gggaggttggaggttgggggccggagtggttattcttggtggcgagagatcgctaatattagggatgg 26146720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 28400118 - 28400165
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggag 75  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  28400118 gggaggttggaggtggggggccggagtgtttctttgtggtggcgggag 28400165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 1380654 - 1380603
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatag 79  Q
    |||||||||||||| ||||||||||||  ||||||||||||  |||||||||    
T  1380654 gggaggttggaggttgggggccggagttgttcttcttggtggagggagatag 1380603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 10689125 - 10689063
Alignment:
Q  29 ggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattaggga 92  Q
    ||||||||||||| |||| |||||||| ||||||||||||||| ||||| || || ||||||||    
T  10689125 ggaggttggaggttgggg-ccggagtggttcttcttggtgacgagagatcgctaatattaggga 10689063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 35488409 - 35488362
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggag 75  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||||    
T  35488409 gggaggttggaggtggggggccgaagtggttcttcgtggtggcgggag 35488362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 6823989 - 6823952
Alignment:
Q  22 gaggtagggaggttggaggtggggggccggagtgtttc 59  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  6823989 gaggcagggaggttggaggttgggggccggagtgtttc 6823952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 32191650 - 32191610
Alignment:
Q  15 tggtgttgaggtagggaggttggaggtggggggccggagtg 55  Q
    ||||| ||||||||||||||||||||  |||||||||||||    
T  32191650 tggtgatgaggtagggaggttggaggatgggggccggagtg 32191610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 19014551 - 19014618
Alignment:
Q  27 agggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    ||||||||||||||| |||| |||||||||||||||||||||  |||||||||  || |||||||||||    
T  19014551 agggaggttggaggttgggg-ccggagtgtttcttcttggtggagggagatagtgaagattagggatgg 19014618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 40563119 - 40563193
Alignment:
Q  21 tgaggtagggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    ||||| || |||||||||||| |||||||||| |||||| ||||||||  | |||||||| || |||||||||||    
T  40563119 tgaggcagagaggttggaggttgggggccggactgtttcatcttggtggagagagatagcgaagattagggatgg 40563193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 28358468 - 28358396
Alignment:
Q  22 gaggtagggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatg 94  Q
    |||| ||||||||||||||| |||||||||||||| || ||||||||  ||||  |||| || ||||||||||    
T  28358468 gaggcagggaggttggaggttgggggccggagtgtctcatcttggtggagggaagtagcgaagattagggatg 28358396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 45795774 - 45795711
Alignment:
Q  32 ggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    |||||||||| |||||| |||||||||| |||||||| |||||  |||| || |||||||||||    
T  45795774 ggttggaggttgggggcaggagtgtttcatcttggtggcgggaagtagcgaagattagggatgg 45795711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 20987734 - 20987668
Alignment:
Q  29 ggaggttggaggtggggggccggagtgtttcttcttggtgacgggagatagcaaaaattagggatgg 95  Q
    ||||||||||||| |||||| |||||| ||||  ||||||  |||||||||| || |||||||||||    
T  20987734 ggaggttggaggtagggggcaggagtggttctctttggtggagggagatagcgaagattagggatgg 20987668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 5809158 - 5809117
Alignment:
Q  23 aggtagggaggttggaggtggggggccggagtgtttcttctt 64  Q
    |||| |||||||||||||| ||||||||||||||||| ||||    
T  5809158 aggttgggaggttggaggttgggggccggagtgtttcatctt 5809117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 22191350 - 22191390
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||| ||| |||||||||||||||||||| |||||    
T  22191350 gggaggttggtggttgggggccggagtgtttcttcgtggtg 22191390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 15226 - 15258
Alignment:
Q  36 ggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||||||||||||||||||||||||||||||||    
T  15226 ggaggtggggggccggagtgtttcttcttggtg 15258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 2441 - 2488
Alignment:
Q  28 gggaggttggaggtggggggccggagtgtttcttcttggtgacgggag 75  Q
    |||||||||||||| ||||||||||||  |||||||||||| ||||||    
T  2441 gggaggttggaggttgggggccggagttgttcttcttggtggcgggag 2488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 67658 - 67612
Alignment:
Q  22 gaggtagggaggttggaggtggggggccggagtgtttcttcttggtg 68  Q
    |||| ||||||||||||||| |||||| |||||| ||||||||||||    
T  67658 gaggcagggaggttggaggttgggggctggagtggttcttcttggtg 67612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University