View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6738_low_12 (Length: 360)
Name: NF6738_low_12
Description: NF6738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6738_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 31766476 - 31766136
Alignment:
| Q |
13 |
gacatcaaacttcttccaccaagcagcaaaacctttggaagccccatgtgtgctgccaaagggaaatagtcgaagagatttcgaccgatcgttattagtg |
112 |
Q |
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| T |
31766476 |
gacatcaaacttcttccaccaagcagcaaaacctttggaagccccatgtgtgctgccaaagggaaatagtcgaagagatttcgaccgatcgttattagtg |
31766377 |
T |
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| Q |
113 |
ttgatgatcttgtcgaagtcattcacctcaacctctagctactgcagtaggatttcaggagtaaggacaaggc-acttttctggtgcgaccatcgcaacc |
211 |
Q |
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| T |
31766376 |
ttgatgatcttgtcgaagtcattcacctcaacctctagctactgcagtaggatttcaggagtaaggacaaggntttttttctggtgcgaccatcgcaacc |
31766277 |
T |
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| Q |
212 |
agaaaagtgccttgtccatactctggggaccatcttccagcgccgaccatcgcaacctcctcctctatcacattctggcggtgactattttcccacgtat |
311 |
Q |
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| T |
31766276 |
agaaaagtgcc-tgtccttactctggggaccatcttccagcgccgaccatcgcaacctcctcctctatcacattctggtggtgactattttcccacgtac |
31766178 |
T |
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| Q |
312 |
gactattaatgatgccttctcttctcgttgatgtccatctca |
353 |
Q |
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| T |
31766177 |
gactattaatgatgccttctcttctcgttgatgatcatctca |
31766136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 1011969 - 1012040
Alignment:
| Q |
240 |
accatcttccagcgccgaccatcgcaacctcctcctctatcacattctggcggtgactattttcccacgtatg |
312 |
Q |
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| T |
1011969 |
accatctttcagcgctgaccatcgcaa-ctcctcctctgtcatgttctggtggtgactcctttcccacatatg |
1012040 |
T |
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