View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6738_low_14 (Length: 336)
Name: NF6738_low_14
Description: NF6738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6738_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 12874213 - 12873909
Alignment:
| Q |
20 |
ataaattcaagataaagaatgaatctattcataaattataccactagattggacatgatgcttaggcaagttttggaatctcgagcttgttccaacacct |
119 |
Q |
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| T |
12874213 |
ataaattcaagataaagaatgaatctattcataaattataccactagattggacatgatgcttaggcaagttttggaatctcgagcttgttccaacacct |
12874114 |
T |
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| Q |
120 |
tcacttgagtcacttctcaatttcttatgtggttgaggacacacaattggtgatgattttggtctagttttcttcttgcatgaaggtgacttgtccaaaa |
219 |
Q |
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| T |
12874113 |
tcacttgagtcacttctcaatttcttatgtggttgaggacacataattgg---cgattttggtctagttttcttcttgcatgaaggtgacttgtccaaaa |
12874017 |
T |
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| Q |
220 |
tttcaatggagtcctcatcactactttgttggtcaaagttgttatgttcatgttgattatcatggaaaggatattcaatctcaagggtactcttggaaaa |
319 |
Q |
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| T |
12874016 |
tttcaatggagtcctcgtcactactttgttggtcaaagttgttttgttcatgttgattgccatggaaaggatattcaatctcaagggtactcttggaaaa |
12873917 |
T |
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| Q |
320 |
tatatgca |
327 |
Q |
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| T |
12873916 |
tatatgca |
12873909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 49164444 - 49164390
Alignment:
| Q |
102 |
gagcttgttccaacaccttcacttgagtcacttctcaatttcttatgtggttgag |
156 |
Q |
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| T |
49164444 |
gagcttgttccaacatcttcacttgcgtcaattctcaatttcttaagtggttgag |
49164390 |
T |
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