View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6738_low_16 (Length: 277)
Name: NF6738_low_16
Description: NF6738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6738_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 25 - 277
Target Start/End: Complemental strand, 42937103 - 42936838
Alignment:
| Q |
25 |
ccatccatccatcaccaatccatgcaattcattcatctttatatattttcaaacaaccattttcaacctctaacacac--------------tcttatat |
110 |
Q |
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| T |
42937103 |
ccatccatccatcaccaatccatgcaattcattcatctt-atatattttcaaacaaccattttcaacctctaacacacacacacacacacactcttatat |
42937005 |
T |
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| Q |
111 |
ctcaacttccattatttccatggctaccaacatagcagaaagagtgcaatatccattagactcttcctcctataaaatcgtcgacgagattggcgccggt |
210 |
Q |
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| T |
42937004 |
ctcaacttccattatttccatggctaccaacatagcagaaagagtgcaatatccattagactcttcctcctataaaatcgtcgacgagattggcgccggt |
42936905 |
T |
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| Q |
211 |
aacagcgccgtcgtctacaaagcaatctgcatccctataaactccacaccagtagctatcaaatcca |
277 |
Q |
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| T |
42936904 |
aacagcgccgtcgtctacaaagcaatctgcatccctataaactccacaccagtagctatcaaatcca |
42936838 |
T |
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