View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6738_low_19 (Length: 240)
Name: NF6738_low_19
Description: NF6738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6738_low_19 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 30934606 - 30934839
Alignment:
| Q |
8 |
tgaactgtttcaatatgtggtacttgttttcattaaagcattggactgtaatctcacaaccattcttaagttttcctaatcaaagcagattatataatca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30934606 |
tgaactgtttcaatatgtggtacttgttttcattaaagcattggactgtaatctcacaaccattcttaagttttcctaatcaaagcagattatatgatca |
30934705 |
T |
|
| Q |
108 |
aaattgtaataagatttatatgta-tcnnnnnnnagtgaataaacaacgaggtccctgaatttgtaatcattattcacttgaatttgttctgtgtcagtc |
206 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30934706 |
aaattgtaataagatttatatgtattctttttttagtgaataaacaacgaggtccctgaatttgtaatcattattcacttgaatttgttctgtgtcagtc |
30934805 |
T |
|
| Q |
207 |
cttgttatccctccgttaacttcaaatgttactt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
30934806 |
cttgttatccctccgttaacttcaaatgttactt |
30934839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 30964781 - 30964894
Alignment:
| Q |
6 |
gatgaactgtttcaatatgtggtacttgttttcattaaagcattggactgtaatctcacaaccattcttaagttttcctaatcaaagcagattatataat |
105 |
Q |
| |
|
|||||| ||||||||||||| |||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
30964781 |
gatgaattgtttcaatatgttgtacttgtcttcattgaagcattggactgcaatctcacgaccattcttaagttttcctaatcaaagtagattataagaa |
30964880 |
T |
|
| Q |
106 |
caaaattgtaataa |
119 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
30964881 |
caaaatagtaataa |
30964894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 30993592 - 30993675
Alignment:
| Q |
8 |
tgaactgtttcaatatgtggtacttgttttcattaaagcattggactgtaatctcacaaccattcttaagttttcctaatcaaa |
91 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||||| | |||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30993592 |
tgaactgtttcaatatggtgtacttgtcttcagtaaagtaatggactctaatctcacaaccattctttagttttcctaatcaaa |
30993675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University