View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6738_low_2 (Length: 710)

Name: NF6738_low_2
Description: NF6738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6738_low_2
NF6738_low_2
[»] scaffold0163 (2 HSPs)
scaffold0163 (152-705)||(19803-20347)
scaffold0163 (1-147)||(20442-20590)
[»] chr3 (12 HSPs)
chr3 (152-693)||(40089200-40089732)
chr3 (152-618)||(2159231-2159697)
chr3 (152-515)||(6426807-6427170)
chr3 (152-515)||(8977346-8977709)
chr3 (152-452)||(9541699-9541999)
chr3 (1-147)||(2159792-2159940)
chr3 (1-147)||(40088957-40089105)
chr3 (304-515)||(16406109-16406320)
chr3 (154-365)||(48982899-48983110)
chr3 (152-274)||(28357117-28357239)
chr3 (197-299)||(25506963-25507065)
chr3 (35-139)||(28356908-28357014)
[»] chr1 (3 HSPs)
chr1 (152-705)||(20175248-20175792)
chr1 (34-147)||(20175887-20176002)
chr1 (152-317)||(14277607-14277772)
[»] chr8 (12 HSPs)
chr8 (292-705)||(23745876-23746289)
chr8 (152-515)||(21208448-21208811)
chr8 (152-515)||(14887167-14887530)
chr8 (152-365)||(18236943-18237156)
chr8 (152-365)||(18246394-18246607)
chr8 (153-375)||(22835377-22835601)
chr8 (152-365)||(33597446-33597659)
chr8 (152-362)||(25046929-25047139)
chr8 (197-406)||(20748585-20748794)
chr8 (152-359)||(12919836-12920043)
chr8 (152-365)||(45494767-45494980)
chr8 (217-371)||(22465909-22466063)
[»] scaffold0066 (1 HSPs)
scaffold0066 (323-698)||(1799-2175)
[»] chr5 (17 HSPs)
chr5 (152-515)||(27416631-27416994)
chr5 (152-515)||(20952361-20952724)
chr5 (266-442)||(21081406-21081582)
chr5 (152-515)||(18384240-18384603)
chr5 (152-515)||(26197803-26198166)
chr5 (152-515)||(33943820-33944183)
chr5 (549-705)||(21081583-21081737)
chr5 (152-406)||(30450160-30450414)
chr5 (152-365)||(24296131-24296343)
chr5 (152-406)||(24416794-24417048)
chr5 (154-365)||(5604796-5605007)
chr5 (152-365)||(18712227-18712440)
chr5 (154-365)||(15326331-15326542)
chr5 (261-452)||(19381365-19381556)
chr5 (152-299)||(22453391-22453538)
chr5 (152-308)||(724040-724196)
chr5 (35-139)||(24417151-24417257)
[»] chr2 (8 HSPs)
chr2 (152-515)||(27165458-27165821)
chr2 (152-515)||(9509242-9509605)
chr2 (155-515)||(45018850-45019210)
chr2 (152-515)||(18655718-18656081)
chr2 (152-455)||(22906705-22907008)
chr2 (152-369)||(22103160-22103376)
chr2 (154-365)||(1795181-1795392)
chr2 (255-371)||(24721271-24721387)
[»] scaffold0313 (2 HSPs)
scaffold0313 (152-515)||(14057-14420)
scaffold0313 (152-414)||(1-263)
[»] scaffold0145 (1 HSPs)
scaffold0145 (160-452)||(33387-33679)
[»] chr6 (6 HSPs)
chr6 (152-515)||(16902446-16902809)
chr6 (152-515)||(24927643-24928006)
chr6 (152-515)||(31361319-31361682)
chr6 (304-515)||(18164565-18164776)
chr6 (152-365)||(27746546-27746759)
chr6 (152-308)||(8999134-8999290)
[»] chr4 (10 HSPs)
chr4 (160-452)||(16269619-16269911)
chr4 (152-515)||(6696718-6697081)
chr4 (152-452)||(17155979-17156279)
chr4 (152-406)||(26816455-26816709)
chr4 (152-406)||(54695344-54695598)
chr4 (152-365)||(14936532-14936745)
chr4 (152-308)||(116437-116593)
chr4 (34-139)||(54695134-54695241)
chr4 (35-139)||(26816800-26816906)
chr4 (69-139)||(17156382-17156454)
[»] scaffold0254 (1 HSPs)
scaffold0254 (152-515)||(13456-13819)
[»] chr7 (13 HSPs)
chr7 (152-515)||(5387393-5387756)
chr7 (152-515)||(6538977-6539340)
chr7 (152-515)||(8505549-8505912)
chr7 (152-515)||(9540718-9541081)
chr7 (152-515)||(16137662-16138025)
chr7 (152-515)||(46501614-46501977)
chr7 (152-515)||(26353777-26354140)
chr7 (152-515)||(32102880-32103243)
chr7 (152-515)||(44901857-44902220)
chr7 (152-452)||(18663448-18663748)
chr7 (152-406)||(15179700-15179954)
chr7 (152-317)||(14640329-14640494)
chr7 (152-308)||(611020-611176)
[»] scaffold0611 (1 HSPs)
scaffold0611 (155-452)||(2509-2806)
[»] scaffold0141 (1 HSPs)
scaffold0141 (148-417)||(30481-30750)
[»] scaffold0049 (2 HSPs)
scaffold0049 (148-417)||(84062-84331)
scaffold0049 (238-365)||(19219-19346)
[»] scaffold0764 (1 HSPs)
scaffold0764 (152-412)||(6357-6617)
[»] scaffold0572 (1 HSPs)
scaffold0572 (152-381)||(13-242)
[»] scaffold0003 (1 HSPs)
scaffold0003 (152-452)||(153135-153435)
[»] scaffold0059 (1 HSPs)
scaffold0059 (152-374)||(45902-46124)
[»] scaffold0142 (1 HSPs)
scaffold0142 (152-375)||(32384-32607)
[»] scaffold0010 (2 HSPs)
scaffold0010 (152-365)||(261085-261298)
scaffold0010 (152-365)||(263388-263601)
[»] scaffold0028 (2 HSPs)
scaffold0028 (152-406)||(99858-100112)
scaffold0028 (35-139)||(99649-99755)
[»] scaffold0233 (1 HSPs)
scaffold0233 (152-406)||(6858-7112)


Alignment Details
Target: scaffold0163 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 152 - 705
Target Start/End: Complemental strand, 20347 - 19803
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| ||||||||||  ||||||||||||||    
T  20347 cacttttaacatccatttgaaaaagtttgatttgtttatgtgcagcatatgcaagtaaaattctaattgcttctaaccttgctatcggagcataagtctc 20248  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||| | ||||||||||| || ||||||| |||||| ||||||||||||||||||    
T  20247 atcatagtcaataccttcttgttgattataaccttgagcaactagtcttgctttgtttctgaccactttaccatcttcatctagtttatttctgaacacc 20148  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||||| | |||||||||| || |||||||| ||||||||||||||| | | |||||||||||||||||||||||||||||    
T  20147 catcttgttccaatgatggttttgtctcgaggttcaggtactaaattccagactttgtttctttcaaactgagaaagctcttcagtcatggcttcaatcc 20048  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtttgtcttgtcttgagatgatgatgttgttctcacttt 551  Q
    ||||||||||| |||| |||||||| |||||||||||||| ||| |||||||||| | ||||||||| ||||||||  |||||||| ||||||| |||||    
T  20047 atgattgatcaatgatagcttcatttatggattttggctccatttgagaaatcatagccatgtttgttttgtcttggaatgatgatcttgttcttacttt 19948  T
Q  552 gtcagcactgtcaccaatgattaactctttaggatgatcagcaactgattttcagttcggaggaatggatagagaagatgaatctggtttgtcttcatcc 651  Q
     |||||| |||||||||||||||| ||||| ||||||||| |||||||||| ||| | |||||||||          ||||||||||||  |||||||||    
T  19947 atcagcagtgtcaccaatgattaattcttttggatgatcaacaactgatttccagcttggaggaatg---------aatgaatctggttcatcttcatcc 19857  T
Q  652 ttttgttttgatatatcagaagtttgttgatgaatagaatgatgatgtccatct 705  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| || |||||    
T  19856 ttttgttttgatatatcagaggtttgttgatgactagaatgatgaggttcatct 19803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 20590 - 20442
Alignment:
Q  1 agacttgaacaattaagagatcttgattatgaatttttctaaaaagagttgtgtcaataggtccacgagaaaaatcatttttgattaaaaatgtgctaag 100  Q
    |||||||||||||||| || ||||| ||| || ||||||| ||||||||||| || ||| ||||||||| |||||||||||||| |||||| || || ||    
T  20590 agacttgaacaattaaaaggtcttggttaagactttttctgaaaagagttgtatcgatatgtccacgagtaaaatcatttttgagtaaaaaggtacttag 20491  T
Q  101 tctt--ataccaagatcaatgagcttgtttgagaccatataaggctttt 147  Q
    ||||  |||||||| || | |||||||||||||||||||||||||||||    
T  20490 tctttcataccaagctcgaggagcttgtttgagaccatataaggctttt 20442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 152 - 693
Target Start/End: Original strand, 40089200 - 40089732
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||||||||| |||||||| || ||||||||||||||    
T  40089200 cacttttaacatccatttgaaaaagtttgatttgtttatgtgcagcataagcaagtaaaattctaattgcttctaaccttgcgaccggagcataagtctc 40089299  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||||||||||||||||||||||| |||||||| |||||| |||| |||| | |||||||| || || ||||||| |||||| ||||||||||||||||||    
T  40089300 atcatagtcaataccttcttgttgattataaccttgagctactagtcttgctttgtttcttaccactttaccatcttcatctagtttatttctgaacacc 40089399  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||  |||||| |||||||||||| || |||||||| ||||||||||||||| ||| |||||| ||||||||||||||||||||||    
T  40089400 catcttgttccaatgatagttttgtcttgaggttcaggtactaaattccagactttgtttctttcaaattgagaaagttcttcagtcatggcttcaatcc 40089499  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtttgtcttgtcttgagatgatgatgttgttctcacttt 551  Q
    ||||||||||| |||| |||||||| |||||||||||||| ||| |||||||||| | ||||||||| ||||||||  |||||||| ||||||| |||||    
T  40089500 atgattgatcaatgatagcttcatttatggattttggctccatttgagaaatcatagccatgtttgttttgtcttggaatgatgatcttgttcttacttt 40089599  T
Q  552 gtcagcactgtcaccaatgattaactctttaggatgatcagcaactgattttcagttcggaggaatggatagagaagatgaatctggtttgtcttcatcc 651  Q
     |||||| |||||||||||||||| ||||||||||||||| |||||||||| ||||| |||||||||          |||||| |||||  ||||||| |    
T  40089600 atcagcagtgtcaccaatgattaattctttaggatgatcaacaactgatttccagtttggaggaatg---------aatgaatttggttcatcttcattc 40089690  T
Q  652 ttttgttttgatatatcagaagtttgttgatgaatagaatga 693  Q
    || |||||||||| |||||| |||||||||||  ||||||||    
T  40089691 ttctgttttgatacatcagaggtttgttgatgtctagaatga 40089732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 152 - 618
Target Start/End: Complemental strand, 2159697 - 2159231
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    |||||||||| |||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||    
T  2159697 cacttttaacgtccatttgaaaaagtttgatttgtttatgtgcagcatatgcaagcaaaattctaatagcttctaaccttgctaccggagcataagtctc 2159598  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||| ||||||||||||||||||| |||||||| |||||||||||  ||| | |||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  2159597 atcgtagtcaataccttcttgttgattataaccttgagcaactagccttgctttgtttctgacaactttaccatcttcatctagtttatttctgaacacc 2159498  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||||| | | |||||||| || |||||||| ||||||||||||||| ||| |||||| |||||| |||||||||||||||    
T  2159497 catcttgttccaatgatggttttgtctcgtggttcaggtactaaattccagactttgtttctttcaaattgagaaagttcttcattcatggcttcaatcc 2159398  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtttgtcttgtcttgagatgatgatgttgttctcacttt 551  Q
    ||||||||||| |||| |||||||| |||||||||||||| ||| |||| ||||| | ||||||||| ||||||||  |||||||| ||||||| |||||    
T  2159397 atgattgatcaatgatagcttcatttatggattttggctccatttgagagatcatagccatgtttgttttgtcttggaatgatgatcttgttcttacttt 2159298  T
Q  552 gtcagcactgtcaccaatgattaactctttaggatgatcagcaactgattttcagttcggaggaatg 618  Q
     |||||| |||||||||||||||| ||||||||||||||| |||||||||| ||| | |||||||||    
T  2159297 atcagcagtgtcaccaatgattaattctttaggatgatcaacaactgatttccagcttggaggaatg 2159231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 6427170 - 6426807
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||  || ||||| |||||||| || || ||| | |||||    
T  6427170 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattcggatggcttctaaccttgcaactggtgcaaaggtctc 6427071  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||||||||| | |||||| || || |||||||| |||    
T  6427070 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctgaaaacc 6426971  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| |||||||    
T  6426970 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggcctcaatcc 6426871  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||| ||||||| ||||||    
T  6426870 aagagtcatcaataatggcttcattgattgacttgggttccatttgagagatcattgccatgtt 6426807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 8977709 - 8977346
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  8977709 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 8977610  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  8977609 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 8977510  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| | |||||    
T  8977509 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcc 8977410  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||||||||||| ||||||    
T  8977409 aagagtcatcaataatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 8977346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 152 - 452
Target Start/End: Complemental strand, 9541999 - 9541699
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  9541999 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 9541900  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| | | | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  9541899 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccgtgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 9541800  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| | |||||    
T  9541799 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcc 9541700  T
Q  452 a 452  Q
    |    
T  9541699 a 9541699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 2159940 - 2159792
Alignment:
Q  1 agacttgaacaattaagagatcttgattatgaatttttctaaaaagagttgtgtcaataggtccacgagaaaaatcatttttgattaaaaatgtgctaag 100  Q
    |||||||||||||||| || ||||| ||| || ||||||| || |||||||| || ||| |||||||||||||||||||||||| |||||| || || ||    
T  2159940 agacttgaacaattaaaaggtcttggttaagactttttctgaagagagttgtatcgatatgtccacgagaaaaatcatttttgagtaaaaaagtacttag 2159841  T
Q  101 tctt--ataccaagatcaatgagcttgtttgagaccatataaggctttt 147  Q
    ||||  |||||||| || | |||||||||||||||||||||||||||||    
T  2159840 tctttcataccaagctcgaggagcttgtttgagaccatataaggctttt 2159792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 40088957 - 40089105
Alignment:
Q  1 agacttgaacaattaagagatcttgattatgaatttttctaaaaagagttgtgtcaataggtccacgagaaaaatcatttttgattaaaaatgtgctaag 100  Q
    |||||||||||||||| || ||||| ||| || ||||||| || |||||||| || ||| |||||||||||||||||||||||| |||||| || || ||    
T  40088957 agacttgaacaattaaaaggtcttggttaagactttttctgaagagagttgtatcgatatgtccacgagaaaaatcatttttgagtaaaaaagtacttag 40089056  T
Q  101 tctt--ataccaagatcaatgagcttgtttgagaccatataaggctttt 147  Q
    ||||  |||||||| || | |||||||||||||||||||||||||||||    
T  40089057 tctttcataccaagctcgaggagcttgtttgagaccatataaggctttt 40089105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 304 - 515
Target Start/End: Complemental strand, 16406320 - 16406109
Alignment:
Q  304 ttgtttctgacaaccttaccattttcatccagtttatttctgaacacccatcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaa 403  Q
    |||||||||||||| ||||| | |||||| || || |||||||| ||||||||||||||||||||| |||| | ||||   |  || ||||| |||||||    
T  16406320 ttgtttctgacaactttaccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttatcttgattatttggaaccaagttccaaa 16406221  T
Q  404 ctttgtttctttcatatttagaaagctcttcagtcatggcttcaatccatgattgatcagtgattgcttcattaatggattttggctctattagagaaat 503  Q
    |||||||||||||| | | |||||| |||||  ||||||| |||||||| || | |||| | || |||||||| || || || || || ||| |||| ||    
T  16406220 ctttgtttctttcaaactgagaaagttcttccttcatggcctcaatccaagagtcatcaataatggcttcattgattgacttgggttccatttgagagat 16406121  T
Q  504 cattgtcatgtt 515  Q
    ||||| ||||||    
T  16406120 cattgccatgtt 16406109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 154 - 365
Target Start/End: Complemental strand, 48983110 - 48982899
Alignment:
Q  154 cttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctcat 253  Q
    |||||||||||||||||||||||||| || | ||| || |   |||||||||| | ||| | ||||||||| |||||||| || |||||| | || ||||    
T  48983110 cttttaacatccatttgaaaaagtttaatatttttatgagatgcatatgcaagaagaatacgaattgcttctaaccttgcaactggagcaaatgtttcat 48983011  T
Q  254 catagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacaccca 353  Q
    ||||||| |||||||| |||| |||||| | ||| ||||| | |||  | || |||||||  || || || | |||||| | ||| |||||||| |||||    
T  48983010 catagtctataccttcctgttgattatatccttgtgcaacaagtctggctttatttctgatgacttttccttcttcatctaatttgtttctgaagaccca 48982911  T
Q  354 tcttgttccaat 365  Q
    ||||||||||||    
T  48982910 tcttgttccaat 48982899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 274
Target Start/End: Original strand, 28357117 - 28357239
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||| | ||| || | ||| || |   |||||||||| | ||||||||||||||| ||||| ||||| |||||| | || ||    
T  28357117 cacttttgacatccatttgaaataatttaatatttttatgagatgcatatgcaagaagaattctaattgcttctaacctggctaccggagcaaaggtttc 28357216  T
Q  252 atcatagtcaataccttcttgtt 274  Q
    ||| || ||||||||||||||||    
T  28357217 atcgtaatcaataccttcttgtt 28357239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 25506963 - 25507065
Alignment:
Q  197 catatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctcatcatagtcaataccttcttgttaattataacattgagcaactaa 296  Q
    |||||||||| | |||||| || ||||| |  |||||||| ||||||||||| ||||||||||| || |||||||||| ||| || | ||| || |||||    
T  25506963 catatgcaagaagaattcttatagcttccagtcttgctactggagcataagtttcatcatagtcgattccttcttgttgattgtatccttgtgccactaa 25507062  T
Q  297 tct 299  Q
    |||    
T  25507063 tct 25507065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 28356908 - 28357014
Alignment:
Q  35 ttttctaaaaagagttgtgtcaataggtccacgagaaaaatcatttttgattaaaaatgtgctaagtctt--ataccaagatcaatgagcttgtttgaga 132  Q
    |||||||||||| ||||| |||||   ||| | ||||||||||||||||||||| || ||||| |  |||  |||||||| || | |||||||||| |||    
T  28356908 ttttctaaaaagggttgtatcaatttttcctctagaaaaatcatttttgattaagaacgtgcttaacctttcataccaagctcgaggagcttgtttaaga 28357007  T
Q  133 ccatata 139  Q
    |||||||    
T  28357008 ccatata 28357014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 152 - 705
Target Start/End: Complemental strand, 20175792 - 20175248
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    |||||||||| |||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  20175792 cacttttaacgtccatttgaaaaagtttgatttgtttatgtgcagcatatgcaagcaaaattctaattgcttctaaccttgctaccggagcataagtctc 20175693  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||| ||||||||||||||||||| |||||||| |||||||||||  ||| | |||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  20175692 atcgtagtcaataccttcttgttgattataaccttgagcaactagccttgctttgtttctgacaactttaccatcttcatctagtttatttctgaacacc 20175593  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||||| | | |||| ||| || |||||||| ||||||||||||||| ||| |||||| |||||| |||||||||||||||    
T  20175592 catcttgttccaatgatggttttgtctcgtggtttaggtactaaattccagactttgtttctttcaaattgagaaagttcttcattcatggcttcaatcc 20175493  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtttgtcttgtcttgagatgatgatgttgttctcacttt 551  Q
    ||||||||||| |||| |||||||| |||||||||||||| ||| |||| ||||| | ||||||||| ||||||||  |||||||| ||||||| |||||    
T  20175492 atgattgatcaatgatagcttcatttatggattttggctccatttgagatatcatagccatgtttgttttgtcttggaatgatgatcttgttcttacttt 20175393  T
Q  552 gtcagcactgtcaccaatgattaactctttaggatgatcagcaactgattttcagttcggaggaatggatagagaagatgaatctggtttgtcttcatcc 651  Q
     |||||| |||||||||||||||| | ||| ||||||||| |||||||||| ||| | |||||||||          |||||| || ||  |||||||      
T  20175392 atcagcagtgtcaccaatgattaatttttttggatgatcaacaactgatttccagcttggaggaatg---------tatgaatttgtttcatcttcattt 20175302  T
Q  652 ttttgttttgatatatcagaagtttgttgatgaatagaatgatgatgtccatct 705  Q
    |||||||||||||||||||| |||||||||||  ||||||||||| || |||||    
T  20175301 ttttgttttgatatatcagatgtttgttgatgtctagaatgatgaggttcatct 20175248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 34 - 147
Target Start/End: Complemental strand, 20176002 - 20175887
Alignment:
Q  34 tttttctaaaaagagttgtgtcaataggtccacgagaaaaatcatttttgattaaaaatgtgctaagtctt--ataccaagatcaatgagcttgtttgag 131  Q
    ||||||| || |||||||| || ||| |||||||||||||||||||||||| |||||| || || ||||||  |||||||| || | |||||||||||||    
T  20176002 tttttctgaagagagttgtatcgatatgtccacgagaaaaatcatttttgagtaaaaaagtacttagtctttcataccaagctcgaggagcttgtttgag 20175903  T
Q  132 accatataaggctttt 147  Q
    ||||||||||||||||    
T  20175902 accatataaggctttt 20175887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 317
Target Start/End: Original strand, 14277607 - 14277772
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    |||||||||||||||||||||| ||||| || | ||| || |   |||||| ||| | ||| |  || ||||| ||||| || || |||||| | || ||    
T  14277607 cacttttaacatccatttgaaagagtttaatatttttatgagatgcatatgtaagaagaatacgtatagcttctaacctggcaactggagcaaatgtttc 14277706  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaac 317  Q
    ||||||||||||||||||||||| ||| || | ||| || ||||||||  | || |||||||||||    
T  14277707 atcatagtcaataccttcttgttgattgtagccttgtgctactaatctagctttatttctgacaac 14277772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 292 - 705
Target Start/End: Original strand, 23745876 - 23746289
Alignment:
Q  292 actaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacccatcttgttccaatgatgtttttgttttgaggttcaggca 391  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| ||| || |||||||||||| |    
T  23745876 actaatctttccttgtttctgacaaccttaccattttcatctagtatatctctgaacacccatcttgttccaatgatggtttcgtcttgaggttcaggta 23745975  T
Q  392 ccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatccatgattgatcagtgattgcttcattaatggattttggctc 491  Q
    || ||||||| ||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||  ||||||| ||||||||||||||    
T  23745976 ccgaattccagactttgtttctctcaaattgagaaagctcttaagtcatggcttcaatccatgattgattagtgataacttcatttatggattttggctc 23746075  T
Q  492 tattagagaaatcattgtcatgtttgtcttgtcttgagatgatgatgttgttctcactttgtcagcactgtcaccaatgattaactctttaggatgatca 591  Q
    |||| ||||||||||   ||||||||  |||| |||  |||||||| ||||||| ||||| ||||||  ||||| |||||||||||||||||||||||||    
T  23746076 tatttgagaaatcataaccatgtttgatttgtgttgttatgatgatcttgttcttactttatcagcagagtcacaaatgattaactctttaggatgatca 23746175  T
Q  592 gcaactgattttcagttcggaggaatggatagagaagatgaatctggtttgtcttcatccttttgttttgatatatcagaagtttgttgatgaatagaat 691  Q
     |||||||||| ||| | ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23746176 acaactgatttccagcttggacgaatggatagagaagatgaatttggttcgtcttcatccttttgttttgatatatcagaagtttgttgatgactagaat 23746275  T
Q  692 gatgatgtccatct 705  Q
     ||||||| |||||    
T  23746276 aatgatgttcatct 23746289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 152 - 515
Target Start/End: Original strand, 21208448 - 21208811
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  21208448 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 21208547  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  21208548 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 21208647  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| | |||||    
T  21208648 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcc 21208747  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||||||||||| ||||||    
T  21208748 aagagtcatcaataatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 21208811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 152 - 515
Target Start/End: Original strand, 14887167 - 14887530
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||||||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  14887167 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcatatgcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 14887266  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || || | |||||||||||| ||| | ||||||||||||||||||||   || ||| || || ||||| ||||||    
T  14887267 atcatagtcaataccttcttgttggttgtagccttgagcaactaaccttgctttgtttctgacaaccttacctcctttatcaagcttgtttctaaacacc 14887366  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||||| ||||   |  || || || ||||||||||||||||||||| | | |||||| || ||  ||||||| |||||||    
T  14887367 catcttgttccaatgatgcttttgtcttgattatttggaactaagttccaaactttgtttctttcaaactgagaaagttcctccttcatggcctcaatcc 14887466  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | ||||   || |||||||| || || || || || ||| |||||||||||| ||||||    
T  14887467 aagagtcatcaagaatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 14887530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 152 - 365
Target Start/End: Complemental strand, 18237156 - 18236943
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    |||||||||||||||||||||| ||||| |||| ||| || |   | |||||||| | ||| |  |||||||| ||||| ||||| |||||| | || ||    
T  18237156 cacttttaacatccatttgaaagagtttaatgtttttatgagatgcgtatgcaagaagaatacatattgcttctaacctggctaccggagcaaatgtttc 18237057  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||||||||||||||||||||||| ||| || | ||| |||||||||||  | || ||||||| ||| || || | |||||| ||||||||||| || |||    
T  18237056 atcatagtcaataccttcttgttgattgtagccttgtgcaactaatctggctttatttctgataacttttccttcttcatctagtttatttctaaaaacc 18236957  T
Q  352 catcttgttccaat 365  Q
    ||||||||||||||    
T  18236956 catcttgttccaat 18236943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 152 - 365
Target Start/End: Complemental strand, 18246607 - 18246394
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    |||||||||||||||||||||| ||||| |||| ||| || |   | |||||||| | ||| |  |||||||| ||||| ||||| |||||| | || ||    
T  18246607 cacttttaacatccatttgaaagagtttaatgtttttatgagatgcgtatgcaagaagaatacatattgcttctaacctggctaccggagcaaatgtttc 18246508  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||||||||||||||||||||||| ||| || | ||| |||||||||||  | || ||||||| ||| || || | |||||| ||||||||||| || |||    
T  18246507 atcatagtcaataccttcttgttgattgtagccttgtgcaactaatctggctttatttctgataacttttccttcttcatctagtttatttctaaaaacc 18246408  T
Q  352 catcttgttccaat 365  Q
    ||||||||||||||    
T  18246407 catcttgttccaat 18246394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 153 - 375
Target Start/End: Complemental strand, 22835601 - 22835377
Alignment:
Q  153 acttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctca 252  Q
    |||||| |||||||||||||| ||||| |||  ||| |||||| |||||||||| | |||||| || ||||| |||||||| || || ||| | ||||||    
T  22835601 acttttcacatccatttgaaagagtttaatgcttttatgtgcagcatatgcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctca 22835502  T
Q  253 tcatagtca--ataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacac 350  Q
    |||||||    |||| ||||||||  || || |  ||||||||||| ||| | |||||||||||||||||||| | |||||| || ||||||||||| ||    
T  22835501 tcatagtttttatacattcttgttggttgtagccgtgagcaactaaccttgcattgtttctgacaaccttaccttcttcatcaagcttatttctgaaaac 22835402  T
Q  351 ccatcttgttccaatgatgtttttg 375  Q
    | ||||||| ||||||||| |||||    
T  22835401 ctatcttgtaccaatgatggttttg 22835377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 33597446 - 33597659
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    |||||||||||||||||||||| ||||| || | ||| || |   |||||||||| | |||||  |||||||| |||||||| || |||||| |||| ||    
T  33597446 cacttttaacatccatttgaaatagtttaatatttttatgagatgcatatgcaagaagaattcgtattgcttctaaccttgccaccggagcaaaagtttc 33597545  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||||||||||||||||||||||| |||||| | ||| || ||||||||  | || ||||||| ||| || || | |||||| | ||| |||||||| |||    
T  33597546 atcatagtcaataccttcttgttgattatacccttgtgcgactaatctcgctttatttctgataacttttccttcttcatctaatttgtttctgaaaacc 33597645  T
Q  352 catcttgttccaat 365  Q
    ||||| ||||||||    
T  33597646 catctggttccaat 33597659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 152 - 362
Target Start/End: Original strand, 25046929 - 25047139
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    |||||||||| ||||||||||||||||| |||| ||| || |   |||||||||| | ||| |  |||||||| ||||| ||||| |||||| | || ||    
T  25046929 cacttttaacgtccatttgaaaaagtttaatgtttttatgagatgcatatgcaagaagaatacgtattgcttctaacctggctaccggagcaaatgtttc 25047028  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||||||||||||||||||||||| ||| || | ||| || ||||||||  | || ||||||| ||| || || | |||||| | ||||||| | || |||    
T  25047029 atcatagtcaataccttcttgttgattgtagccttgtgcgactaatctggctttatttctgataacttttccttcttcatctaatttatttttaaagacc 25047128  T
Q  352 catcttgttcc 362  Q
    |||||||||||    
T  25047129 catcttgttcc 25047139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 197 - 406
Target Start/End: Complemental strand, 20748794 - 20748585
Alignment:
Q  197 catatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctcatcatagtcaataccttcttgttaattataacattgagcaactaa 296  Q
    |||||||||| | ||||||||||||||| ||||| ||||| |||||| | || ||||| || |||||||||||||||| ||| || | |||||| || ||    
T  20748794 catatgcaagaagaattctaattgcttctaacctggctaccggagcaaaggtttcatcgtaatcaataccttcttgttgattgtacccttgagctaccaa 20748695  T
Q  297 tcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacccatcttgttccaatgatgtttttgttttgaggttcaggcaccaaa 396  Q
    |||  | |||||||| | ||| || || | |||||  ||||||||||| || || ||||||||||||||||||  ||  |||||||||| ||| || | |    
T  20748694 tctagctttgtttcttataacttttccttcttcatttagtttatttctaaatactcatcttgttccaatgatggattgattttgaggtttaggaacaaga 20748595  T
Q  397 ttccaaactt 406  Q
    ||||| ||||    
T  20748594 ttccatactt 20748585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 152 - 359
Target Start/End: Complemental strand, 12920043 - 12919836
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    |||||||||||||||||||||| ||||| || | ||| || |   |||||||||| | |||||  |||||||| ||||| || |  |||||| | || ||    
T  12920043 cacttttaacatccatttgaaagagtttaatatttttatgagatgcatatgcaagaagaattcgcattgcttctaacctggcaattggagcaaatgtttc 12919944  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||||||||||||||||||||||| |||||| | ||| || ||||||||  | || ||||||||||| || || | |||||| | ||| |||||||| |||    
T  12919943 atcatagtcaataccttcttgttgattatagccttgtgctactaatctagctttatttctgacaacttttccttcttcatctaatttgtttctgaagacc 12919844  T
Q  352 catcttgt 359  Q
    || |||||    
T  12919843 caccttgt 12919836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 45494767 - 45494980
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| || ||||||||||||||||| |||  ||| || |   |||||||||| | |||||| || ||||| |  |||||||| ||||||||||| ||    
T  45494767 cactttttacgtccatttgaaaaagttttatgcatttatgagatgcatatgcaagaagaattcttatagcttccagtcttgctactggagcataagtttc 45494866  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||||||||| || |||||||||| ||| || | ||| ||||||| |||| |||||||||     ||||| || | |||||||| ||| |||||||| |||    
T  45494867 atcatagtcgattccttcttgttgattgtatccttgtgcaactagtcttgccttgtttcgagttacctttccttcttcatccaatttgtttctgaatacc 45494966  T
Q  352 catcttgttccaat 365  Q
    ||||| || |||||    
T  45494967 catctggtaccaat 45494980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 371
Target Start/End: Complemental strand, 22466063 - 22465909
Alignment:
Q  217 attgcttcgaaccttgctacaggagcataagtctcatcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaa 316  Q
    |||||||| || ||||| || |||||| | || |||  ||| |||||||||||||||| ||| |||| ||||||||| | |||  | ||||||||||| |    
T  22466063 attgcttccaatcttgcaactggagcaaatgtttcagtataatcaataccttcttgttgattgtaaccttgagcaacaagtctagctttgtttctgacta 22465964  T
Q  317 ccttaccattttcatccagtttatttctgaacacccatcttgttccaatgatgtt 371  Q
    | | ||| | |||||  || || ||||| || |||||| |||||||||| |||||    
T  22465963 cttcaccttgttcattgagcttgtttctaaatacccattttgttccaataatgtt 22465909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 323 - 698
Target Start/End: Original strand, 1799 - 2175
Alignment:
Q  323 cattttcatccagtttatttctga-acacccatcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatt 421  Q
    |||||||||||||| ||||||||| |||| ||| |||||||||||||| ||| || |||| ||| ||| ||||||||||| ||||||||||| ||| |||    
T  1799 cattttcatccagtatatttctgacacacgcattttgttccaatgatggtttcgtcttgatgtttaggtaccaaattccatactttgtttctctcaaatt 1898  T
Q  422 tagaaagctcttcagtcatggcttcaatccatgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtttgtctt 521  Q
     |||||||||||||||||||||||||||||||||||||| | ||||  ||||||| |||||||||||||||||| |||||||||  | ||| ||||  ||    
T  1899 gagaaagctcttcagtcatggcttcaatccatgattgattaatgataacttcatttatggattttggctctatttgagaaatcaaagccatatttgattt 1998  T
Q  522 gtcttgagatgatgatgttgttctcactttgtcagcactgtcaccaatgattaactctttaggatgatcagcaactgattttcagttcggaggaatggat 621  Q
    ||||||  |||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| ||| | ||||||||||||    
T  1999 gtcttgttatgatgatcttgttcttactttatcagcagtgtcaccaatgattaactctttaggatgatcaacaactgatttccagcttggaggaatggat 2098  T
Q  622 agagaagatgaatctggtttgtcttcatccttttgttttgatatatcagaagtttgttgatgaatagaatgatgatg 698  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2099 agagaagatgaatttggttcgtcttcatccttttgttttgatatatcagaagtttgttgatgactagaatgatgatg 2175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 3e-68; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 27416994 - 27416631
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | ||||||||||||||| |||||||| || || ||| |||||||    
T  27416994 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctaattgcttctaaccttgcaactggtgcaaaagtctc 27416895  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||||||||| | |||||| ||||| |||||||| |||    
T  27416894 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagtttgtttctgaaaacc 27416795  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    ||| |||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| |||||||    
T  27416794 catgttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggcctcaatcc 27416695  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||| ||||||||||||||    
T  27416694 aagagtcatcaataatggcttcattgattgacttgggttccatttgagagatcattgtcatgtt 27416631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 20952724 - 20952361
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| ||   ||| |||||| |||| ||||| |  |||||||| ||||| ||||||||||| || ||| |||||||    
T  20952724 cacttttcacatccatttgaaaaagtttaatacttttatgtgcagcataagcaagaagtattctaatggcttctaaccttgctactggtgcaaaagtctc 20952625  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||||||||||||||||||||||| ||| |||| |||||| ||||  ||| | |||||||||||||||||||| | |||||| || || || ||||| |||    
T  20952624 atcatagtcaataccttcttgttgattgtaaccttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgttcctgaaaacc 20952525  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| ||||| |||||   |  || || |||||||||||||| ||||||||| | | |||||| |||||  |||||||||||||||    
T  20952524 catcttgttccaatgatggttttgctttgattatttggaactaaattccaaactttatttctttcaaactgagaaagttcttccttcatggcttcaatcc 20952425  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    |||| | |||| |||| |||||||| || || || || || | | |||||||||||| ||||||    
T  20952424 atgagtcatcaatgatggcttcattgattgacttaggttccaattgagaaatcattgccatgtt 20952361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 266 - 442
Target Start/End: Original strand, 21081406 - 21081582
Alignment:
Q  266 cttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacccatcttgttccaat 365  Q
    ||||||||| |||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21081406 cttcttgttgattataaccttgagcaactaatcttggcttgtttctgacaaccttaccattttcatccagtttatttctgaacacccatcttgttccaat 21081505  T
Q  366 gatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatgg 442  Q
    |||| |||||| |||||||||||  ||||||||||| |||||||| || ||| ||| |||||||| |||||||||||    
T  21081506 gatggttttgtcttgaggttcagataccaaattccagactttgttcctctcaaattgagaaagctattcagtcatgg 21081582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 18384603 - 18384240
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  18384603 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 18384504  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  18384503 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 18384404  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| | |||||    
T  18384403 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcc 18384304  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||||||||||| ||||||    
T  18384303 aagagtcatcaataatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 18384240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 152 - 515
Target Start/End: Original strand, 26197803 - 26198166
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  26197803 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 26197902  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  26197903 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 26198002  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| | |||||    
T  26198003 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcc 26198102  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||||||||||| ||||||    
T  26198103 aagagtcatcaataatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 26198166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 33944183 - 33943820
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  33944183 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 33944084  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  33944083 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 33943984  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||| | ||||||||| | | |||||| |||||  ||||||| | |||||    
T  33943983 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactctatttctttcaaactgagaaagttcttccttcatggccttaatcc 33943884  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||||||||||| ||||||    
T  33943883 aagagtcatcaataatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 33943820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 549 - 705
Target Start/End: Original strand, 21081583 - 21081737
Alignment:
Q  549 tttgtcagcactgtcaccaatgattaactctttaggatgatcagcaactgattttcagttcggaggaatggatagagaagatgaatctggtttgtcttca 648  Q
    |||||||||| |||||| ||||||||||||||||||||||||| ||||| |||| ||| | ||| |  |||||||||||||||||||||||| |||||||    
T  21081583 tttgtcagcagtgtcacaaatgattaactctttaggatgatcaacaactaatttccagcttggacg--tggatagagaagatgaatctggttcgtcttca 21081680  T
Q  649 tccttttgttttgatatatcagaagtttgttgatgaatagaatgatgatgtccatct 705  Q
     | ||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  21081681 acattttgttttgatatatcagaagtttgttgatgactagaatgatgatgttcatct 21081737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 152 - 406
Target Start/End: Original strand, 30450160 - 30450414
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||| | ||| || | ||| || |   |||||||||| | ||||||||||||||| ||||| ||||| |||||| | || ||    
T  30450160 cacttttgacatccatttgaaataatttaatatttttatgagatgcatatgcaagaagaattctaattgcttctaacctggctaccggagcaaaggtttc 30450259  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||| || |||||||||||||||| ||| || | |||||| || |||||  | |||||||||| ||| || || | |||||  ||||||||||| || |||    
T  30450260 atcgtaatcaataccttcttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacc 30450359  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactt 406  Q
    ||||||||||||||||||  ||  |||||||||| ||| || | |||||| ||||    
T  30450360 catcttgttccaatgatggattgattttgaggtttaggaacaagattccatactt 30450414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 24296131 - 24296343
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    |||||||||||||||||||||| ||||| |||| ||| || |   | |||||||| | ||| |  |||||||| ||||| ||||| |||||| | || ||    
T  24296131 cacttttaacatccatttgaaagagtttaatgt-tttatgagatgcgtatgcaagaagaatacgtattgcttctaacctggctaccggagcaaatgtttc 24296229  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||||||||||||||||||||||| ||| || | ||| |||||||||||  | || ||||||| ||| || || | |||||| ||||||||||| || |||    
T  24296230 atcatagtcaataccttcttgttgattgtagccttgtgcaactaatctggctttatttctgataacttttccttcttcatctagtttatttctaaaaacc 24296329  T
Q  352 catcttgttccaat 365  Q
    ||||||||||||||    
T  24296330 catcttgttccaat 24296343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 152 - 406
Target Start/End: Complemental strand, 24417048 - 24416794
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||| | ||| || | ||| || |   |||||||||| | ||||||||||||||| ||||| ||||| |||||| | || ||    
T  24417048 cacttttgacatccatttgaaataatttaatatttttatgagatgcatatgcaagaagaattctaattgcttctaacctggctaccggagcaaaggtttc 24416949  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||| || |||||||||||||||| ||| || | |||||| || |||||  | ||||||||||  || || || | |||||  ||||||||||| || |||    
T  24416948 atcgtaatcaataccttcttgttgattgtacccttgagctaccaatctagctttgtttctgatgacttttccttcttcatttagtttatttctaaatacc 24416849  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactt 406  Q
    ||||||||||||||||||  ||  |||||||||| ||| || | |||||| ||||    
T  24416848 catcttgttccaatgatggattgattttgaggtttaggaacaagattccatactt 24416794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 154 - 365
Target Start/End: Complemental strand, 5605007 - 5604796
Alignment:
Q  154 cttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctcat 253  Q
    |||||||||||||||||||||||||| || | ||| || |   |||||||||| | ||| | ||||||||| |||||||| || |||||| | || ||||    
T  5605007 cttttaacatccatttgaaaaagtttaatatttttatgagatgcatatgcaagaagaatacgaattgcttctaaccttgcaactggagcaaatgtttcat 5604908  T
Q  254 catagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacaccca 353  Q
    ||||||| |||||||| |||| |||||| | ||| ||||| | |||  | || |||||||  || || || | |||||| | ||| |||||||| |||||    
T  5604907 catagtctataccttcctgttgattatatccttgtgcaacaagtctggctttatttctgatgacttttccttcttcatctaatttgtttctgaagaccca 5604808  T
Q  354 tcttgttccaat 365  Q
    ||||||||||||    
T  5604807 tcttgttccaat 5604796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 152 - 365
Target Start/End: Complemental strand, 18712440 - 18712227
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| || ||||||||||||||||| |||  ||| || |   |||||||||| | |||||| || ||||| |  |||||||| ||||||||||| ||    
T  18712440 cactttttacgtccatttgaaaaagttttatgcatttatgagatgcatatgcaagaagaattcttatagcttccagtcttgctactggagcataagtttc 18712341  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||||||||| || |||||||||| ||| || | ||| ||||||| |||| |||||||||     ||||| || | |||||||| ||| |||||||| |||    
T  18712340 atcatagtcgattccttcttgttgattgtatccttgtgcaactagtcttgccttgtttcgagtcacctttccttcttcatccaatttgtttctgaatacc 18712241  T
Q  352 catcttgttccaat 365  Q
    ||||| || |||||    
T  18712240 catctggtaccaat 18712227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 154 - 365
Target Start/End: Original strand, 15326331 - 15326542
Alignment:
Q  154 cttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctcat 253  Q
    ||||| || ||||||||||||||||| |||  ||| || |   |||||||||| | |||||| || ||||| |  |||||||| ||||||||||| ||||    
T  15326331 ctttttacgtccatttgaaaaagttttatgcatttatgagatgcatatgcaagaagaattcttatagcttccagtcttgctactggagcataagtttcat 15326430  T
Q  254 catagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacaccca 353  Q
    ||||||| || |||||||||| ||| || | ||| ||||||| |||| |||||||||     ||||| || | |||||||| ||| |||||||| |||||    
T  15326431 catagtcgattccttcttgttgattgtatccttgtgcaactagtcttgccttgtttcgagtcacctttccttcttcatccaatttgtttctgaataccca 15326530  T
Q  354 tcttgttccaat 365  Q
    ||| || |||||    
T  15326531 tctggtaccaat 15326542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 261 - 452
Target Start/End: Original strand, 19381365 - 19381556
Alignment:
Q  261 aataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacccatcttgtt 360  Q
    ||||||||||||||  || || | |||||||||||| ||| | |||||||| ||||||||||| | |||||| || || |||||||| ||| |||||||     
T  19381365 aataccttcttgttggttgtagccttgagcaactaaccttgctttgtttctaacaaccttaccttcttcatcaagcttgtttctgaaaacctatcttgta 19381464  T
Q  361 ccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcca 452  Q
    ||||||||| |||||  ||||   |  || || || ||||||||||||||||||||| | | |||||| | |||  ||||||| ||||||||    
T  19381465 ccaatgatggttttgccttgatcatttggaactaagttccaaactttgtttctttcaaactgagaaagttattctttcatggcctcaatcca 19381556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 299
Target Start/End: Original strand, 22453391 - 22453538
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    |||||||||||||||||||||| ||||| || | |||||| |   |||||||||| | ||||   |||||||| |||||||| || |||| | | || ||    
T  22453391 cacttttaacatccatttgaaatagtttaatatttttgtgagatgcatatgcaagaagaatttgtattgcttctaaccttgccaccggagaaaatgtttc 22453490  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatct 299  Q
    ||||||||||||||||| ||||| |||||| | ||| || ||||||||    
T  22453491 atcatagtcaataccttgttgttgattatacccttgtgcgactaatct 22453538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 308
Target Start/End: Original strand, 724040 - 724196
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| || |||||||||||||||||||||   || || |   |||||||||| | |||||| || ||||| |  || || ||||||||||| || ||    
T  724040 cactttttacgtccatttgaaaaagtttgatgcacttatgagatgcatatgcaagaagaattcttatggcttcaagtctagccacaggagcataggtttc 724139  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtt 308  Q
    ||| |||||||| |||||||||| ||| |||| |||||| || |||||  |||||||    
T  724140 atcgtagtcaatgccttcttgttgattgtaaccttgagctaccaatctggccttgtt 724196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 24417257 - 24417151
Alignment:
Q  35 ttttctaaaaagagttgtgtcaataggtccacgagaaaaatcatttttgattaaaaatgtgctaagtctt--ataccaagatcaatgagcttgtttgaga 132  Q
    |||||||||||| ||||| |||||   ||| | ||||||||||||||||||||| ||||| || |  |||  |||||||| || | |||||||||| |||    
T  24417257 ttttctaaaaagggttgtatcaatttttcctctagaaaaatcatttttgattaagaatgtacttaacctttcataccaagctcgaggagcttgtttaaga 24417158  T
Q  133 ccatata 139  Q
    |||||||    
T  24417157 ccatata 24417151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 8e-66; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 152 - 515
Target Start/End: Original strand, 27165458 - 27165821
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| ||   ||| |||||| |||| ||||| |  |||||||| ||||| ||||||||||| || ||| |||||||    
T  27165458 cacttttcacatccatttgaaaaagtttaatacttttatgtgcagcatacgcaagaagtattctaatggcttctaaccttgctactggtgcaaaagtctc 27165557  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||||||||||||||||||||||| ||| |||| |||||| ||||  ||| | |||||||||||||||||||| | |||||| || || || ||||| |||    
T  27165558 atcatagtcaataccttcttgttgattgtaaccttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgttcctgaaaacc 27165657  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| ||||| |||||   |  || || |||||||||||||||||||||||| | | |||||| |||||  |||||||||||||||    
T  27165658 catcttgttccaatgatggttttgctttgattatttggaactaaattccaaactttgtttctttcaaactgagaaagttcttccttcatggcttcaatcc 27165757  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    |||| | |||| |||| |||||||| || || || || || | | |||||||||||| ||||||    
T  27165758 atgagtcatcaatgatggcttcattgattgacttaggttccaattgagaaatcattgccatgtt 27165821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 152 - 515
Target Start/End: Original strand, 9509242 - 9509605
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  9509242 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 9509341  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  9509342 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 9509441  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| | |||||    
T  9509442 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcc 9509541  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||||||||||| ||||||    
T  9509542 aagagtcatcaataatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 9509605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 155 - 515
Target Start/End: Complemental strand, 45019210 - 45018850
Alignment:
Q  155 ttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctcatc 254  Q
    |||| |||||||||||||||||||| |||  ||| |||||| |||||||||| | |||||| || ||||| |||||||| || || ||| | ||||||||    
T  45019210 ttttcacatccatttgaaaaagtttaatgcttttatgtgcagcatatgcaagaataattctgatggcttctaaccttgcaactggtgcaaaggtctcatc 45019111  T
Q  255 atagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacccat 354  Q
    ||| ||||||||||||||||  || || | |||||||||||| ||| | |||||||||||||||||||| | |||||| ||||| |||||||| ||||||    
T  45019110 ataatcaataccttcttgttggttgtagccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagtttgtttctgaaaacccat 45019011  T
Q  355 cttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatccatg 454  Q
    ||||||||||||||| |||||| ||||   |  || || |  ||||||||||| ||||||||| | | |||||| |||||  ||||||| |||||||| |    
T  45019010 cttgttccaatgatggttttgtcttgattatttggaactaggttccaaactttttttctttcaaactgagaaagttcttccttcatggcctcaatccaag 45018911  T
Q  455 attgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | | |||| | || |||||||| || || || || || ||| |||| ||||||| ||||||    
T  45018910 agtcatcaataatagcttcattgattgacttgggttccatttgagagatcattgccatgtt 45018850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 18656081 - 18655718
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  18656081 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 18655982  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  18655981 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 18655882  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||| ||||||||||| | | |||||| |||||  ||||||| | |||||    
T  18655881 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactctgtttctttcaaactgagaaagttcttccttcatggccttaatcc 18655782  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||||||||||| ||||||    
T  18655781 aagagtcatcaataatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 18655718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 152 - 455
Target Start/End: Complemental strand, 22907008 - 22906705
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| ||||||||||||||||| |  ||||| || |||||  |||||||||| || ||| | |||||    
T  22907008 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcaacatatgcaagaagtattctgatagcttctcaccttgctactggtgcaaatgtctc 22906909  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || || | |||||| ||||  |||   |||||||||| ||||||||| | |||||| || || ||||| || | |    
T  22906908 atcatagtcaataccttcttgttggttgtagccttgagccactagccttgttttgtttctgaaaaccttaccttcttcatcaagcttgtttctaaaaatc 22906809  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||| ||||||| ||| | |||||   |  || || |||||||||||||||||||||||  | | |||||| |||||  ||||||| |||||||    
T  22906808 catcttgttctaatgatggtttcgctttgattatttggaactaaattccaaactttgtttctttctaactaagaaagttcttccttcatggcctcaatcc 22906709  T
Q  452 atga 455  Q
    ||||    
T  22906708 atga 22906705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 152 - 369
Target Start/End: Complemental strand, 22103376 - 22103160
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||| ||||||||| |||| ||| |||||| ||||| |||| | ||||||||||||||| ||||||||||| || ||| | |||||    
T  22103376 cactttttacatccatttaaaaaagtttaatgtttttatgtgcatcatat-caaggagaattctaattgcttctaaccttgctactggtgcaaaggtctc 22103278  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
     ||| ||| ||||| ||| ||||  || || | ||||||||| |||||| ||||||||||  |||| ||  ||| |||||| || |||||||| ||||||    
T  22103277 ttcaaagttaatacattcgtgttggttgtacccttgagcaaccaatcttgccttgtttctagcaactttgtcatcttcatcaagcttatttctaaacacc 22103178  T
Q  352 catcttgttccaatgatg 369  Q
    ||||||||||||||||||    
T  22103177 catcttgttccaatgatg 22103160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 154 - 365
Target Start/End: Complemental strand, 1795392 - 1795181
Alignment:
Q  154 cttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctcat 253  Q
    |||||||||||||||||||||||||| || | ||| || |   |||||||||| | ||| | ||||||||| |||||||| || |||||| | || ||||    
T  1795392 cttttaacatccatttgaaaaagtttaatatttttatgagatgcatatgcaagaagaatacgaattgcttctaaccttgcaactggagcaaatgtttcat 1795293  T
Q  254 catagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacaccca 353  Q
    ||||||| |||||||| |||| |||||| | ||| ||||| | |||  | || |||||||  || || || | |||||| | ||| |||||||| |||||    
T  1795292 catagtctataccttcctgttgattatatccttgtgcaacaagtctggctttatttctgatgacttttccttcttcatctaatttgtttctgaagaccca 1795193  T
Q  354 tcttgttccaat 365  Q
    ||||||||||||    
T  1795192 tcttgttccaat 1795181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 255 - 371
Target Start/End: Original strand, 24721271 - 24721387
Alignment:
Q  255 atagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacccat 354  Q
    ||||||||| ||||| |||| | | |||| ||||||||| | |||| | ||||||||||| || | ||| | ||||| ||| || |||||||| ||||||    
T  24721271 atagtcaatgccttcctgttgactgtaaccttgagcaacaagtcttgctttgtttctgactacttcaccttgttcattcagcttgtttctgaatacccat 24721370  T
Q  355 cttgttccaatgatgtt 371  Q
     |||||||||| |||||    
T  24721371 tttgttccaataatgtt 24721387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 124; Significance: 2e-63; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 14420 - 14057
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| |  ||||| || ||||| ||||||||||| || ||| |||||||    
T  14420 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagtattctgatagcttctaaccttgctactggtgcaaaagtctc 14321  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || || | |||||| ||||  ||| | |||||||||||||||||||| | |||||| || || |||||||| |||    
T  14320 atcatagtcaataccttcttgttggttgtagccttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctgaaaacc 14221  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| ||||| |||||   |  || || |||||||||||||||||||||||| ||| |||||| |||||  |||||||||||||||    
T  14220 catcttgttccaatgatggttttgctttgattatttggaactaaattccaaactttgtttctttcaaattgagaaagttcttccttcatggcttcaatcc 14121  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    |||| | |||| | || |||||||| || || || || || | | |||||||||||| ||||||    
T  14120 atgagtcatcaataatggcttcattgattgacttgggttccaattgagaaatcattgccatgtt 14057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 152 - 414
Target Start/End: Complemental strand, 263 - 1
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| |  ||||| || ||||| ||||||||||| || ||| |||||||    
T  263 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagtattctgatagcttctaaccttgctactggtgcaaaagtctc 164  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || || | |||||| ||||  ||| | |||||||||||||||||||| | |||||| || || |||||||| |||    
T  163 atcatagtcaataccttcttgttggttgtagccttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctgaaaacc 64  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctt 414  Q
    |||||||||||||||||| ||||| |||||   |  || || |||||||||||||||||||||    
T  63 catcttgttccaatgatggttttgctttgattatttggaactaaattccaaactttgtttctt 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 113; Significance: 7e-57; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 160 - 452
Target Start/End: Original strand, 33387 - 33679
Alignment:
Q  160 acatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctcatcatagt 259  Q
    |||||||||||||||||||| |||  ||| |||||| |||||||||| | |||||| || ||||| |||||||| || || ||| | |||||||||||||    
T  33387 acatccatttgaaaaagtttaatgcttttatgtgcagcatatgcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctcatcatagt 33486  T
Q  260 caataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacccatcttgt 359  Q
    |||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||||||||  | |||||| || || |||||||| |||||||||||    
T  33487 caataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttacgttcttcatcaagcttgtttctgaaaacccatcttgt 33586  T
Q  360 tccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcca 452  Q
    |||||||||| |||||| ||||  ||  || || || ||||||||||||||||||||| | | |||||| |||||  ||||||| ||||||||    
T  33587 tccaatgatggttttgtcttgattttttggaactaagttccaaactttgtttctttcaaactgagaaagttcttctttcatggcctcaatcca 33679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 3e-56; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 16902809 - 16902446
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  16902809 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 16902710  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||||||||| | |||||| || || ||||| || |||    
T  16902709 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctaaaaacc 16902610  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| |||||||    
T  16902609 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggcctcaatcc 16902510  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||| ||||||| ||||||    
T  16902509 aagagtcatcaataatggcttcatttattgacttgggttccatttgagagatcattgccatgtt 16902446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 152 - 515
Target Start/End: Original strand, 24927643 - 24928006
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| || || | |||||| || ||||| |||||||| || || ||| | |||||    
T  24927643 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagccagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 24927742  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||||||||| | |||||| || || |||||||| |||    
T  24927743 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctgaaaacc 24927842  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| |||||||    
T  24927843 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggcctcaatcc 24927942  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||| ||||||| ||||||    
T  24927943 aagagtcatcaataatggcttcattgattgacttgggttccatttgagagatcattgccatgtt 24928006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 31361682 - 31361319
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  31361682 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 31361583  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  31361582 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 31361483  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| | |||||    
T  31361482 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcc 31361383  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||||||||||| ||||||    
T  31361382 aagagtcatcaataatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 31361319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 304 - 515
Target Start/End: Complemental strand, 18164776 - 18164565
Alignment:
Q  304 ttgtttctgacaaccttaccattttcatccagtttatttctgaacacccatcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaa 403  Q
    |||||||||||||| ||||| | |||||| || || ||||| || ||||||||||||||||||||| |||| | ||||   |  || ||||| |||||||    
T  18164776 ttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatggttttatcttgattatttggaaccaagttccaaa 18164677  T
Q  404 ctttgtttctttcatatttagaaagctcttcagtcatggcttcaatccatgattgatcagtgattgcttcattaatggattttggctctattagagaaat 503  Q
    |||||||||||||| | | |||||| |||||  ||||||| | |||||| || | |||| | || |||||||| || || || || || ||| |||||||    
T  18164676 ctttgtttctttcaaactgagaaagttcttccttcatggccttaatccaagagtcatcaataatggcttcattgattgacttgggttccatttgagaaat 18164577  T
Q  504 cattgtcatgtt 515  Q
    ||||| ||||||    
T  18164576 cattgccatgtt 18164565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 27746546 - 27746759
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |    ||| || |   |||||||||| |||||||| || ||||| || || || || ||||||||||| ||    
T  27746546 cacttttgacatccatttgaaaaagtttaaaacatttatgagatgcatatgcaagcaaaattcttatggcttccaatctagcaactggagcataagtttc 27746645  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||| ||||| |||||||||| |||||| | ||| || ||||||||  | |||||||  | ||  || || | |||||| ||||| ||||| || |||    
T  27746646 atcataatcaatcccttcttgttgattatatccttgtgccactaatctggctttgtttcgaataattttgccttcttcatctagtttgtttctaaaaacc 27746745  T
Q  352 catcttgttccaat 365  Q
    ||||||||||||||    
T  27746746 catcttgttccaat 27746759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 308
Target Start/End: Complemental strand, 8999290 - 8999134
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| || |||||||||||||||||||||   || || |   |||||||||| | |||||| || ||||| |  || || ||||||||||| || ||    
T  8999290 cactttttacgtccatttgaaaaagtttgatgcacttatgagatgcatatgcaagaagaattcttatggcttcaagtctagccacaggagcataggtttc 8999191  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtt 308  Q
    ||| |||||||| |||||||||| ||| |||| |||||| || |||||  |||||||    
T  8999190 atcgtagtcaatgccttcttgttgattgtaaccttgagctaccaatctggccttgtt 8999134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 2e-54; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 160 - 452
Target Start/End: Complemental strand, 16269911 - 16269619
Alignment:
Q  160 acatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctcatcatagt 259  Q
    |||||||||||||||||||| |||  ||| |||||| |||||||||| | |||||| || ||||| |||||||| || || ||| | |||||||||||||    
T  16269911 acatccatttgaaaaagtttaatgcttttatgtgcagcatatgcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctcatcatagt 16269812  T
Q  260 caataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacccatcttgt 359  Q
    |||||||||||||||  || || | |||||||||||| ||| | |||||||||||||||||||  | |||||| || || |||||||| |||||||||||    
T  16269811 caataccttcttgttggttgtagccttgagcaactaaccttgctttgtttctgacaaccttacgttcttcatcaagcttgtttctgaaaacccatcttgt 16269712  T
Q  360 tccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcca 452  Q
    |||||||||| |||||| ||||  ||  || || || ||||||||||||||||||||| | | |||||| |||||  ||||||| ||||||||    
T  16269711 tccaatgatggttttgtcttgattttttggaactaagttccaaactttgtttctttcaaactgagaaagttcttctttcatggcctcaatcca 16269619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 6697081 - 6696718
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  6697081 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 6696982  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  6696981 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 6696882  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| | |||||    
T  6696881 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcc 6696782  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||||||||||| ||||||    
T  6696781 aagagtcatcaataatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 6696718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 152 - 452
Target Start/End: Complemental strand, 17156279 - 17155979
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| ||||||||||||||||||||  ||  ||| |||||| ||||||  || | |||| | || ||||| |||||||| || || ||| | |||||    
T  17156279 cacttttcacatccatttgaaaaagtttactgcttttatgtgcagcatatggtagaagaattttgatggcttctaaccttgcaactggtgcaaaggtctc 17156180  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    || | | ||||||||||||||||  || || | |||||||||||| ||| | |||||||||||||||||||| | |||||| || || ||| |||| ||     
T  17156179 ataaaaatcaataccttcttgttggttgtagccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttatgaaaact 17156080  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||| ||||||||| |||||  ||||   |  || || || ||||||||||||||||||||| | | |||||| |||||  ||||||| |||||||    
T  17156079 catcttgtaccaatgatggttttgccttgatcatttggaactaagttccaaactttgtttctttcaaactgagaaagttcttctttcatggcctcaatcc 17155980  T
Q  452 a 452  Q
    |    
T  17155979 a 17155979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 152 - 406
Target Start/End: Complemental strand, 26816709 - 26816455
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||| | ||| || | ||| || |   |||||||||| | ||||||||||||||| ||||| ||||| |||||| | || ||    
T  26816709 cacttttgacatccatttgaaataatttaatatttttatgagatgcatatgcaagaagaattctaattgcttctaacctggctaccggagcaaaggtttc 26816610  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||| || |||||||||||||||| ||| || | |||||| || |||||  | |||||||||| ||| || || | |||||  ||||||||||| || |||    
T  26816609 atcgtaatcaataccttcttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacc 26816510  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactt 406  Q
    ||||||||||||||||||  ||  |||||||||| ||| || | |||||| ||||    
T  26816509 catcttgttccaatgatggattgattttgaggtttaggaacaagattccatactt 26816455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 152 - 406
Target Start/End: Original strand, 54695344 - 54695598
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||| | ||| || | ||| || |   |||||||||| | ||||||||||||||| ||||| ||||| |||||| | || ||    
T  54695344 cacttttgacatccatttgaaataatttaatatttttatgagatgcatatgcaagaagaattctaattgcttctaacctggctaccggagcaaaggtttc 54695443  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||| || |||||||||||||||| ||| || | |||||| || |||||  | |||||||||| ||| || || | |||||  ||||||||||| || |||    
T  54695444 atcgtaatcaataccttcttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacc 54695543  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactt 406  Q
    ||||||||||||||||||  ||  |||||||||| ||| || | |||||| ||||    
T  54695544 catcttgttccaatgatggattgattttgaggtttaggaacaagattccatactt 54695598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 152 - 365
Target Start/End: Complemental strand, 14936745 - 14936532
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| || ||||||||||||||||| |||  ||| || |   |||||||||| | |||||| || ||||| |  |||||||| ||||||||||| ||    
T  14936745 cactttttacgtccatttgaaaaagttttatgcatttatgagatgcatatgcaagaagaattcttatagcttccagtcttgctactggagcataagtttc 14936646  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||||||||| || |||||||||| ||| || | ||| ||||||| |||| |||||||||     ||||| || | |||||||| ||| |||||||| |||    
T  14936645 atcatagtcgattccttcttgttgattgtatccttgtgcaactagtcttgccttgtttcgagttacctttccttcttcatccaatttgtttctgaatacc 14936546  T
Q  352 catcttgttccaat 365  Q
    ||||| || |||||    
T  14936545 catctggtaccaat 14936532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 308
Target Start/End: Complemental strand, 116593 - 116437
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| || |||||||||||||||||||||   || || |   |||||||||| | |||||| || ||||| |  || || ||||||||||| || ||    
T  116593 cactttttacgtccatttgaaaaagtttgatgcacttatgagatgcatatgcaagaagaattcttatggcttcaagtctagccacaggagcataggtttc 116494  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtt 308  Q
    ||| |||||||| |||||||||| ||| |||| |||||| || |||||  |||||||    
T  116493 atcgtagtcaatgccttcttgttgattgtaaccttgagctaccaatctggccttgtt 116437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 54695134 - 54695241
Alignment:
Q  34 tttttctaaaaagagttgtgtcaataggtccacgagaaaaatcatttttgattaaaaatgtgctaagtctt--ataccaagatcaatgagcttgtttgag 131  Q
    ||||||||||||| ||||| |||||   ||| | ||||||||||||||||||||| ||||| || |  |||  |||||||| || | |||||||||| ||    
T  54695134 tttttctaaaaagggttgtatcaatttttcctctagaaaaatcatttttgattaagaatgtacttaacctttcataccaagctcgaggagcttgtttaag 54695233  T
Q  132 accatata 139  Q
    ||||||||    
T  54695234 accatata 54695241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 26816906 - 26816800
Alignment:
Q  35 ttttctaaaaagagttgtgtcaataggtccacgagaaaaatcatttttgattaaaaatgtgctaagtctt--ataccaagatcaatgagcttgtttgaga 132  Q
    |||||||||||| ||||| |||||   ||| | ||||||||||||||||||||| || ||||| |  |||  |||||||| || | |||||||||| |||    
T  26816906 ttttctaaaaagggttgtatcaatttttcctctagaaaaatcatttttgattaagaacgtgcttaacctttcataccaagctcgaggagcttgtttaaga 26816807  T
Q  133 ccatata 139  Q
    |||||||    
T  26816806 ccatata 26816800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 17156454 - 17156382
Alignment:
Q  69 gaaaaatcatttttgattaaaaatgtgctaagtc--ttataccaagatcaatgagcttgtttgagaccatata 139  Q
    |||||| ||||||  |||||||||||||||||||  | ||||| || || | |||||||||||||||||||||    
T  17156454 gaaaaaccattttcaattaaaaatgtgctaagtctatcataccgagctctaggagcttgtttgagaccatata 17156382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 108; Significance: 7e-54; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 152 - 515
Target Start/End: Original strand, 13456 - 13819
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  13456 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 13555  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  13556 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 13655  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| | |||||    
T  13656 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcc 13755  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||||||||||| ||||||    
T  13756 aagagtcatcaataatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 13819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 7e-54; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 152 - 515
Target Start/End: Original strand, 5387393 - 5387756
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| ||||||||||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  5387393 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcaacataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 5387492  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  5387493 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 5387592  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| | |||  ||||||| | |||||    
T  5387593 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagtttttccttcatggccttaatcc 5387692  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||||||||||| ||||||    
T  5387693 aagagtcatcaataatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 5387756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 6539340 - 6538977
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  6539340 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 6539241  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  6539240 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 6539141  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| | |||||    
T  6539140 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcc 6539041  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||||||||||| ||||||    
T  6539040 aagagtcatcaataatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 6538977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 8505912 - 8505549
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  8505912 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 8505813  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  8505812 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 8505713  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||| ||||||||||| | | |||||| |||||  ||||||| | |||||    
T  8505712 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactctgtttctttcaaactgagaaagttcttccttcatggccttaatcc 8505613  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | |||| |||| | || |||||||| || || || || || ||| |||||||||||| ||||||    
T  8505612 aagattcatcaataatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 8505549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 152 - 515
Target Start/End: Original strand, 9540718 - 9541081
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||||||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  9540718 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcatcatatgcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 9540817  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || || | |||||||||||| ||| | |||||| ||||||||||||| | |||||| ||||| |||||||| | |    
T  9540818 atcatagtcaataccttcttgttggttgtagccttgagcaactaaccttgctttgtttttgacaaccttaccttcttcatcaagtttgtttctgaaaatc 9540917  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||||| || |   |  || || |  ||||||||||||||||||||||| | |||||| |||||  ||||||| |||||||    
T  9540918 catcttgttccaatgatggttttgtcttaattatttggaactaggttccaaactttgtttctttcatactgagaaagttcttccttcatggcctcaatcc 9541017  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||| ||||||| ||||||    
T  9541018 aagagtcatcaataatagcttcattgattgacttgggttccatttgagagatcattgccatgtt 9541081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 152 - 515
Target Start/End: Original strand, 16137662 - 16138025
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  16137662 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 16137761  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||||||||| | |||||| || || ||||| || |||    
T  16137762 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctaaaaacc 16137861  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||| | |||||||    
T  16137862 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatgacctcaatcc 16137961  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||| ||||||| ||||||    
T  16137962 aagagtcatcaataatggcttcatttattgacttgggttccatttgagagatcattgccatgtt 16138025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 46501977 - 46501614
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  46501977 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 46501878  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  46501877 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 46501778  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| | |||||    
T  46501777 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcc 46501678  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||||||||||| ||||||    
T  46501677 aagagtcatcaataatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 46501614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 152 - 515
Target Start/End: Original strand, 26353777 - 26354140
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  26353777 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 26353876  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  26353877 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 26353976  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| | |||||    
T  26353977 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcc 26354076  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||| ||||||| ||||||    
T  26354077 aagagtcatcaataatggcttcattgattgacttgggttccatttgagagatcattgccatgtt 26354140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 32103243 - 32102880
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| ||   ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  32103243 cacttttcacatccatttgaaaaagtttaatacttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 32103144  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  32103143 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 32103044  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||||||||||||||| | | |||||| |||||  ||||||| | |||||    
T  32103043 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcc 32102944  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||||||||||| ||||||    
T  32102943 aagagtcatcaataatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 32102880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 152 - 515
Target Start/End: Complemental strand, 44902220 - 44901857
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  44902220 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 44902121  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | |||||||||||||| ||||| | |||||| || || ||||| || |||    
T  44902120 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacc 44902021  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||| | ||||   |  || ||||| ||||||||| ||||||||||| | | |||||| |||||  ||||||| | |||||    
T  44902020 catcttgttccaatgatggttttatcttgattatttggaaccaagttccaaactctgtttctttcaaactgagaaagttcttccttcatggccttaatcc 44901921  T
Q  452 atgattgatcagtgattgcttcattaatggattttggctctattagagaaatcattgtcatgtt 515  Q
    | || | |||| | || |||||||| || || || || || ||| |||||||||||| ||||||    
T  44901920 aagagtcatcaataatggcttcattgattgacttgggttccatttgagaaatcattgccatgtt 44901857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 152 - 452
Target Start/End: Complemental strand, 18663748 - 18663448
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| ||||||| ||||||||| | |||||| || || || |||||||| || || ||| |||||||    
T  18663748 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcaatatatgcaagaagaattctgatggcctctaaccttgcaactggtgcaaaagtctc 18663649  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||| ||||  || || | ||||||||| || ||| | |||||||||||||||||||  | |||||| || || ||| |||| | |    
T  18663648 atcatagtcaataccttcctgttggttgtagccttgagcaaccaaccttgctttgtttctgacaaccttactttcttcatcaagcttgtttttgaaaaac 18663549  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| |||||  ||||   |  || || || ||||||||||||||||||||| | | |||||| || ||  ||||||| |||||||    
T  18663548 catcttgttccaatgatggttttgccttgattatttggaactaagttccaaactttgtttctttcaaactaagaaagttcctccctcatggcctcaatcc 18663449  T
Q  452 a 452  Q
    |    
T  18663448 a 18663448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 152 - 406
Target Start/End: Complemental strand, 15179954 - 15179700
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||| | ||| || | ||| || |   |||||||||| | ||||||||||||||| ||||| ||||| |||||| | || ||    
T  15179954 cacttttgacatccatttgaaataatttaatatttttatgagatgcatatgcaagaagaattctaattgcttctaacctagctactggagcaaaggtttc 15179855  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||| || |||||||||||||||| ||| || | |||||| || |||||  | |||||||||| ||| || || | |||||  ||||||||||| || |||    
T  15179854 atcgtaatcaataccttcttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacc 15179755  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactt 406  Q
    ||||||||||||||||||  ||  |||||||||| ||| || | |||||| ||||    
T  15179754 catcttgttccaatgatggattgattttgaggtttaggaacaagattccatactt 15179700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 317
Target Start/End: Original strand, 14640329 - 14640494
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    |||||||||||||||||||||| ||||| || | ||| || |   |||||||||| | ||| |  || ||||| ||||| || || |||||| |||| ||    
T  14640329 cacttttaacatccatttgaaagagtttaatatttttatgagatgcatatgcaagaagaatacgtatagcttctaacctggcaactggagcaaaagtttc 14640428  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaac 317  Q
    ||||||||||||||||||||||| ||| || | ||| || ||||||||  | || |||||||||||    
T  14640429 atcatagtcaataccttcttgttgattgtagccttgtgctactaatctagctttatttctgacaac 14640494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 308
Target Start/End: Complemental strand, 611176 - 611020
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| || |||||||||||||||||||||   || || |   |||||||||| | |||||| || ||||| |  ||  | ||||||||||| || ||    
T  611176 cactttttacgtccatttgaaaaagtttgatgcacttatgagatgcatatgcaagaagaattcttatggcttcaagtctacccacaggagcataggtttc 611077  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtt 308  Q
    ||| |||||||| |||||||||| ||| |||| |||||| || |||||  |||||||    
T  611076 atcgtagtcaatgccttcttgttgattgtaaccttgagctaccaatctggccttgtt 611020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 155 - 452
Target Start/End: Complemental strand, 2806 - 2509
Alignment:
Q  155 ttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctcatc 254  Q
    |||| |||||||||||||||||||| |||  ||| |||||| |||||||||| | |||||| || ||||| |||||||| || || ||| | ||||||||    
T  2806 ttttcacatccatttgaaaaagtttaatgcttttatgtgcatcatatgcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctcatc 2707  T
Q  255 atagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacccat 354  Q
    ||||||||||||||||||||  || || | |||||||||||| ||| | ||||||||||||||||||   | |||||| || || |||||||| ||||||    
T  2706 atagtcaataccttcttgttggttgtagccttgagcaactaaccttgctttgtttctgacaaccttaaattcttcatcaagcttgtttctgaaaacccat 2607  T
Q  355 cttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcca 452  Q
    ||||||||||||||| |||||| ||||  ||  || || || ||||||||||||||||||||| | | |||||| |||||  ||||||| ||||||||    
T  2606 cttgttccaatgatggttttgtcttgattttttggaactaagttccaaactttgtttctttcaaactgagaaagttcttctttcatggcctcaatcca 2509  T

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Target: scaffold0141 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 148 - 417
Target Start/End: Complemental strand, 30750 - 30481
Alignment:
Q  148 aaaacacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataag 247  Q
    ||||||||||| |||||||||||||||||||| |||  ||| |||||| |||||||||| | ||||||||| ||||| |||||||| || || ||| | |    
T  30750 aaaacacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcatatgcaagaagaattctaatggcttctaaccttgcaactggtgcaaagg 30651  T
Q  248 tctcatcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaa 347  Q
    |||||||||||||||||| ||||||||  || || | |||||||||||| ||| | ||||||||||||||||| || | |||||| || || ||||||||    
T  30650 tctcatcatagtcaatacattcttgttggttgtagccttgagcaactaaccttgctttgtttctgacaacctttccttcttcatcaagcttgtttctgaa 30551  T
Q  348 cacccatcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttca 417  Q
     ||||||||||||||||||||| ||||| |||||   |  || || || |||||||||||||||||||||    
T  30550 aacccatcttgttccaatgatggttttgctttgattatttggaactaagttccaaactttgtttctttca 30481  T

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Target: scaffold0049 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 148 - 417
Target Start/End: Original strand, 84062 - 84331
Alignment:
Q  148 aaaacacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataag 247  Q
    ||||||||||| |||||||||||||||||||| |||  ||| |||||| |||||||||| | ||||||||| ||||| |||||||| || || ||| | |    
T  84062 aaaacacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcatatgcaagaagaattctaatggcttctaaccttgcaactggtgcaaagg 84161  T
Q  248 tctcatcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaa 347  Q
    |||||||||||||||||| ||||||||  || || | |||||||||||| ||| | ||||||||||||||||| || | |||||| || || ||||||||    
T  84162 tctcatcatagtcaatacattcttgttggttgtagccttgagcaactaaccttgctttgtttctgacaacctttccttcttcatcaagcttgtttctgaa 84261  T
Q  348 cacccatcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttca 417  Q
     ||||||||||||||||||||| ||||| |||||   |  || || || |||||||||||||||||||||    
T  84262 aacccatcttgttccaatgatggttttgctttgattatttggaactaagttccaaactttgtttctttca 84331  T

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Target: scaffold0049; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 238 - 365
Target Start/End: Complemental strand, 19346 - 19219
Alignment:
Q  238 ggagcataagtctcatcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtt 337  Q
    ||||||||||| |||||||||||||| |||||||||| |||||| | ||| || |||| |||  | |||||||  | ||  || || | |||||| ||||    
T  19346 ggagcataagtttcatcatagtcaatcccttcttgttgattatatccttgtgccactagtctggctttgtttcgaataattttgccttcttcatctagtt 19247  T
Q  338 tatttctgaacacccatcttgttccaat 365  Q
    | ||||| || |||||||||||||||||    
T  19246 tgtttctaaagacccatcttgttccaat 19219  T

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Target: scaffold0764 (Bit Score: 97; Significance: 3e-47; HSPs: 1)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 152 - 412
Target Start/End: Original strand, 6357 - 6617
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| |  ||||| || ||||| ||||||||||| || ||| |||||||    
T  6357 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagtattctgatagcttctaaccttgctactggtgcaaaagtctc 6456  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || || | |||||| ||||  ||| | |||||||||||||||||||| | |||||| || || |||||||| |||    
T  6457 atcatagtcaataccttcttgttggttgtagccttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctgaaaacc 6556  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttc 412  Q
    |||||||||||||||||| ||||| |||||   |  || || |||||||||||||||||||    
T  6557 catcttgttccaatgatggttttgctttgattatttggaactaaattccaaactttgtttc 6617  T

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Target: scaffold0572 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 152 - 381
Target Start/End: Complemental strand, 242 - 13
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| ||   ||| |||||| |||| ||||| |  |||||||| ||||| ||||||||||| || ||| |||||||    
T  242 cacttttcacatccatttgaaaaagtttaatacttttatgtgcagcataagcaagaagtattctaatggcttctaaccttgctactggtgcaaaagtctc 143  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||||||||||||||||||||||| ||| |||| |||||| ||||  ||| | |||||||||||||||||||| | |||||| || || ||  |||| |||    
T  142 atcatagtcaataccttcttgttgattgtaaccttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgttcttgaaaacc 43  T
Q  352 catcttgttccaatgatgtttttgttttga 381  Q
    |||||||||||||||||| ||||| |||||    
T  42 catcttgttccaatgatggttttgctttga 13  T

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Target: scaffold0003 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 152 - 452
Target Start/End: Complemental strand, 153435 - 153135
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| ||||||||||||||||  |  ||||| || ||||| ||||||||||| || ||| | |||||    
T  153435 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcaacatatgcaaaaagtattctgatagcttctaaccttgctactggtgcaaatgtctc 153336  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || || | |||||| ||||  |||   |||||||||| ||||||||| | |||||| || || ||||| || |||    
T  153335 atcatagtcaataccttcttgttggttgtagccttgagccactagccttgttttgtttctgataaccttaccttcttcatcaagcttgtttcttaaaacc 153236  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactttgtttctttcatatttagaaagctcttcagtcatggcttcaatcc 451  Q
    |||||||||||||||||| ||||| |||||   |  |  || ||||||||||||||||||| |||| ||| |||||| |||||  ||||||| |||||||    
T  153235 catcttgttccaatgatggttttgctttgattatttgtaactaaattccaaactttgtttcgttcaaattgagaaagttcttccttcatggcctcaatcc 153136  T
Q  452 a 452  Q
    |    
T  153135 a 153135  T

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Target: scaffold0059 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 152 - 374
Target Start/End: Original strand, 45902 - 46124
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||||||| |||  ||| |||||| |||| ||||| | |||||| || ||||| |||||||| || || ||| | |||||    
T  45902 cacttttcacatccatttgaaaaagtttaatgcttttatgtgcagcataagcaagaagaattctgatggcttctaaccttgcaactggtgcaaaggtctc 46001  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||||||||||||||||||||  || |||| |||||||||||| ||| | || ||||||||||| || |||| |||||| || || |||||||| |||    
T  46002 atcatagtcaataccttcttgttggttgtaaccttgagcaactaaccttgctttatttctgacaactttgccatcttcatcaagcttgtttctgaaaacc 46101  T
Q  352 catcttgttccaatgatgttttt 374  Q
    |||||||||||||||||| ||||    
T  46102 catcttgttccaatgatggtttt 46124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 152 - 375
Target Start/End: Original strand, 32384 - 32607
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||||| ||| |||  ||| |||||| |||||| ||| | |||||| || ||||| |||||||| || || | | |||||||    
T  32384 cacttttgacatccatttgaaaaattttaatgcttttttgtgcagcatatgaaagaagaattctgatggcttctaaccttgcaactggtgaaaaagtctc 32483  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    |||||| ||| ||||||||||||  || || | |||||||||||| ||| | ||  |||||||||||||||| | ||||||  |||| |||||||| ||     
T  32484 atcataatcagtaccttcttgttggttgtagccttgagcaactaaccttgcttttcttctgacaaccttaccttcttcatcatgtttgtttctgaaaact 32583  T
Q  352 catcttgttccaatgatgtttttg 375  Q
    |||||||||||||||||| |||||    
T  32584 catcttgttccaatgatggttttg 32607  T

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Target: scaffold0010 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 152 - 365
Target Start/End: Complemental strand, 261298 - 261085
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    |||||||||||||||||||||| ||||| |||| ||| || |   | |||||||| | ||| |  |||||||| ||||| ||||| |||||| | || ||    
T  261298 cacttttaacatccatttgaaagagtttaatgtttttatgagatgcgtatgcaagaagaatacatattgcttctaacctggctaccggagcaaatgtttc 261199  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||||||||||||||||||||||| ||| || | ||| |||||||||||  | || ||||||| ||| || || | |||||| ||||||||||| || |||    
T  261198 atcatagtcaataccttcttgttgattgtagccttgtgcaactaatctggctttatttctgataacttttccttcttcatctagtttatttctaaaaacc 261099  T
Q  352 catcttgttccaat 365  Q
    ||||||||||||||    
T  261098 catcttgttccaat 261085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 152 - 365
Target Start/End: Complemental strand, 263601 - 263388
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    |||||||||||||||||||||| ||||| |||| ||| || |   |||||||||| | ||| |  |||||||| ||||| || || |||||| | || ||    
T  263601 cacttttaacatccatttgaaagagtttaatgtttttatgagatgcatatgcaagaagaatacgtattgcttctaacctggccaccggagcaaatgtttc 263502  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||||||||||||||||||||||| ||| || | ||| |||||||||||    || ||||||| ||| || || | |||||| ||||||||||| || |||    
T  263501 atcatagtcaataccttcttgttgattgtagccttgtgcaactaatctggttttatttctgataacttttccttcttcatctagtttatttctaaaaacc 263402  T
Q  352 catcttgttccaat 365  Q
    ||||||||||||||    
T  263401 catcttgttccaat 263388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 152 - 406
Target Start/End: Original strand, 99858 - 100112
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||| | ||| || | ||| || |   |||||||||| | ||||||||||||||| ||||| ||||| |||||| | || ||    
T  99858 cacttttgacatccatttgaaataatttaatatttttatgagatgcatatgcaagaagaattctaattgcttctaacctggctaccggagcaaaggtttc 99957  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||| || |||||||||||||||| ||| || | |||||| || |||||  | |||||||||| ||| || || | |||||  ||||||||||| || |||    
T  99958 atcgtaatcaataccttcttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacc 100057  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactt 406  Q
    ||||||||||||||||||  ||  |||||||||| ||| || | |||||| ||||    
T  100058 catcttgttccaatgatggattgattttgaggtttaggaacaagattccatactt 100112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 99649 - 99755
Alignment:
Q  35 ttttctaaaaagagttgtgtcaataggtccacgagaaaaatcatttttgattaaaaatgtgctaagtctt--ataccaagatcaatgagcttgtttgaga 132  Q
    |||||||||||| ||||| |||||   ||| | ||||||||||||||||||||| || ||||| |  |||  |||||||| || | |||||||||| |||    
T  99649 ttttctaaaaagggttgtatcaatttttcctctagaaaaatcatttttgattaagaacgtgcttaacctttcataccaagctcgaggagcttgtttaaga 99748  T
Q  133 ccatata 139  Q
    |||||||    
T  99749 ccatata 99755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 152 - 406
Target Start/End: Complemental strand, 7112 - 6858
Alignment:
Q  152 cacttttaacatccatttgaaaaagtttgatgtgtttgtgtgcaacatatgcaagtaaaattctaattgcttcgaaccttgctacaggagcataagtctc 251  Q
    ||||||| |||||||||||||| | ||| || | ||| || |   |||||||||| | ||||||||||||||| ||||| ||||| |||||| | || ||    
T  7112 cacttttgacatccatttgaaataatttaatatttttatgggatgcatatgcaagaagaattctaattgcttctaacctggctaccggagcaaaggtttc 7013  T
Q  252 atcatagtcaataccttcttgttaattataacattgagcaactaatcttaccttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 351  Q
    ||| || |||||||||||||||| ||| || | |||||| || |||||  | |||||||||| ||| || || | |||||  ||||||||||| || | |    
T  7012 atcgtaatcaataccttcttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatatc 6913  T
Q  352 catcttgttccaatgatgtttttgttttgaggttcaggcaccaaattccaaactt 406  Q
    ||||||||||||||||||  ||  |||||||||| ||| || | |||||| ||||    
T  6912 catcttgttccaatgatggattgattttgaggtttaggaacaagattccatactt 6858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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