View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6738_low_21 (Length: 236)
Name: NF6738_low_21
Description: NF6738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6738_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30934841 - 30935063
Alignment:
| Q |
1 |
tgatgacttgagacatgaaacgattatgtgacagtacacatgggttacaaatagcttctacatatactagggattatattgtagacattatacacatact |
100 |
Q |
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| T |
30934841 |
tgatgactagagacatgaaacgatgatgtgacagtacacatgggttacaaatagcttctacatatactagggattatattgtagacattatacacatact |
30934940 |
T |
|
| Q |
101 |
tgctcataaacacacctaccaagctacaacaattggttaaagatttcaaacatacaaatcattccaatcaaatacttccacattttcaattcattctcaa |
200 |
Q |
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| T |
30934941 |
tgctcataaacacgcctaccaagctacaacaattggttaaagatttcaaacatacacatgattccaatcaaatacttccacattttcaattcattctcaa |
30935040 |
T |
|
| Q |
201 |
aagattcaatgtgaaggggattt |
223 |
Q |
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| T |
30935041 |
aagattcaatgtgaacgggattt |
30935063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 61 - 223
Target Start/End: Original strand, 30993837 - 30993999
Alignment:
| Q |
61 |
catatactagggattatattgtagacattatacacatacttgctcataaacacacctaccaagctacaacaattggttaaagatttcaaacatacaaatc |
160 |
Q |
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| T |
30993837 |
catatacaagggcttaaattgtaaacattatacacacactttctcttaaacacacctagcaagctacaacaattggctaatgatttcaaacatacacatg |
30993936 |
T |
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| Q |
161 |
attccaatcaaatacttccacattttcaattcattctcaaaagattcaatgtgaaggggattt |
223 |
Q |
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| T |
30993937 |
attccaatcaaatacctcaacattttctatcaatactctaaagattcaatataaaggtgattt |
30993999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 25048611 - 25048687
Alignment:
| Q |
138 |
taaagatttcaaacatacaaatcattccaatcaaatacttccacattttcaattcattctcaaaagattcaatgtga |
214 |
Q |
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| T |
25048611 |
taaaaatttcaaacatacacataatttcaatgaaatacttcaacattttcaattaattctaagaaaattcaatgtga |
25048687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 41147650 - 41147737
Alignment:
| Q |
108 |
aaacacacctaccaagctacaacaattggttaaagatttcaaacatacaaatcattccaatcaaatacttccacattttcaattcatt |
195 |
Q |
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| T |
41147650 |
aaacacacctaccaagctacaacaattggtaaaagatttcaaacatacacataattccaatcaaacacttcaacattttcaattcatt |
41147737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 33485887 - 33485851
Alignment:
| Q |
138 |
taaagatttcaaacatacaaatcattccaatcaaata |
174 |
Q |
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| T |
33485887 |
taaagatttcaaacatacacataattccaatcaaata |
33485851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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