View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6738_low_4 (Length: 519)
Name: NF6738_low_4
Description: NF6738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6738_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 29412757 - 29413236
Alignment:
| Q |
1 |
atctcactatagtccatttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagacatgaacaaagtgttcgatgtctcagcttcat |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29412757 |
atctcactatagtccttttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagacatgaacaaagcgttcgatgtctcagcttcat |
29412856 |
T |
|
| Q |
101 |
ttattgcgtatgcatcttccttgtcatcatccttcaattcaacttcacgtggaccaggagcagctgcataagttgatgctgtgagagatacaacctccca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29412857 |
ttattgcgtatgcatcttccttgtcatcatccttcaactcaacttcacgtggaccaggagcagctgcataagttgatgctgtgagagatacaacctccca |
29412956 |
T |
|
| Q |
201 |
gtcattaccgcgagaagacttgtccccttcatcttcagttcctgccatcttttgtcttcatcaaaaagttgatatcagagttctaatttaactacaaaac |
300 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29412957 |
gtcattactgcgagaagacttttccccttcatcttcagttcctgccatcttttgtcttcatcaaaaagttgatatcagagttctaattttactacaaaac |
29413056 |
T |
|
| Q |
301 |
caaaaagtgaaaaacaaacatacatagcaaaagcaattatgcaggcaggggagaggtagggcagctaggttgaccaaaaaagatgtctgatttcatcaca |
400 |
Q |
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||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
29413057 |
caaaaagtgaaaaacaaacgcacgtagcaaaaacaattatgcaggcaggggagaggtagggcagttaggttgaccaaaaaaggtgtctgatttcatcaca |
29413156 |
T |
|
| Q |
401 |
acaatgcatacatctacaagaaaactactacttttgggaagaaaggaaaaaactaaaagtttcacagttcacagggatgt |
480 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
29413157 |
acaatgcatacatctacaagaaaactactacttttgggaagaaagaaaaaaactaaaagtttcacagttcacaggcatgt |
29413236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 10161422 - 10160947
Alignment:
| Q |
1 |
atctcactatagtccatttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagacatgaacaaagtgttcgatgtctcagcttcat |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10161422 |
atctcactatagtctgtttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagacatgaacaaagcgttcgatgtctcagcttcat |
10161323 |
T |
|
| Q |
101 |
ttattgcgtatgcatcttccttgtcatcatccttcaattcaacttcacgtggaccaggagcagctgcataagttgatgctgtgagagatacaacctccca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
10161322 |
ttattgcgtatgcatcttccttgtcatcatccttcaactcaacttcacgtggaccaggagtagctgcataagttgatgttgtgagagatacaacctccca |
10161223 |
T |
|
| Q |
201 |
gtcattaccgcgagaagacttgtccccttcatcttcagttcctgccatcttttgtcttcatcaaaaagttgatatcagagttctaatttaactacaaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
10161222 |
gtcattaccgcgagaagacttgtccccttcattttcagttcctgccatcttttgtcttcatcaaaaagttgctatcagagttctaattttactacaaaac |
10161123 |
T |
|
| Q |
301 |
c------aaaaagtgaaaaacaaacatacatagcaaaagcaattatgcaggcaggggagaggtagggcagctaggttgaccaaaaaagatgtctgatttc |
394 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| |||||| |
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| T |
10161122 |
caaaaccaaaaagtgaaaaacaaacatacatagcaaaagcaattatgcaggcaggggagaggtagggcagttaggttgatcaaaaaaggtgttcgatttc |
10161023 |
T |
|
| Q |
395 |
atcacaacaatgcatacatctacaagaaaactactacttttgggaagaaaggaaaaaactaaaagtttcacagttc |
470 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
10161022 |
atcacaacaatgcatacatctacgagaaaactactacttttgggaagaaagaaaaaaactaaaagtttcacagttc |
10160947 |
T |
|
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