View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6738_low_5 (Length: 445)
Name: NF6738_low_5
Description: NF6738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6738_low_5 |
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| [»] scaffold0002 (4 HSPs) |
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| [»] scaffold1869 (1 HSPs) |
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| [»] scaffold0263 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 15 - 428
Target Start/End: Original strand, 401552 - 401966
Alignment:
| Q |
15 |
catcaacattgtctggactgaagaaaggaatcttccaactggcgttgaaaattccggtgccttttccatcgacgtaagtctcatgggcaaagcccaaaat |
114 |
Q |
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| T |
401552 |
catcaacattgtctggaccaaagaaaggaatcttccaactggcgttgaaaattccggtgccttttccatcgacgtaagtctcatgggcaaagcccaaaat |
401651 |
T |
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| Q |
115 |
gaaatggaattcagggatgtggcggccgataatatcagctgggaaattatttaaagaatctgggtaggacttgacgccaatgtattctctaaaaatgact |
214 |
Q |
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| T |
401652 |
gaaatggaattcagggatgtggcggccgataatatcagctgggaaattatttaaagaatctgggtaggacttcacgccaatgtattctctaaaaatgact |
401751 |
T |
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| Q |
215 |
ggattcacatcattgtcaccgatgataggagctgttgacattttggaggatcgatatatgagaaattaatatatactttgttttttgtgttttctatatg |
314 |
Q |
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| T |
401752 |
ggattcacatcattgtcaccgatgataggagctgttgacattttggaggatcgatatatgagaaattaatatatactttgttttttgtgttttctttatg |
401851 |
T |
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| Q |
315 |
ttggggtttagatagattggaatgagtaactctaatttatgcatgcccttttataaggctacttctccttctt-aatgatgtcatctgcatttgtcatac |
413 |
Q |
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| T |
401852 |
ttggggtttagatagattggaatgagtaactctaatttatgcattcccttttataaggctacttctccttcttaaatgatgtcatctgcatttgtcatac |
401951 |
T |
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| Q |
414 |
cattacatcttatgt |
428 |
Q |
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| T |
401952 |
cattacatcttatgt |
401966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 238 - 352
Target Start/End: Original strand, 405323 - 405438
Alignment:
| Q |
238 |
gataggagctgttgacattttggaggatcgatatatgagaaattaatatatactttgtttt-ttgtgttttctatatgttggggtttagatagattggaa |
336 |
Q |
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| T |
405323 |
gataggagctgttgacatttcggaggatcgatatatgagaaattaatatataatttctttttttgtgttttccatatgttggggtttagatagattggaa |
405422 |
T |
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| Q |
337 |
tgagtaactctaattt |
352 |
Q |
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| T |
405423 |
tgagtaactctaattt |
405438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 93525 - 93611
Alignment:
| Q |
154 |
tgggaaattatttaaagaatctgggtaggacttgacgccaatgtattctctaaaaatgactggattcacatcattgtcaccgatgat |
240 |
Q |
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| T |
93525 |
tgggaaattattaagagaagctgggtatggcttcacgccaatgtattctcgaaaaatgaatggatcaacagcattgtcaccgatgat |
93611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 421
Target Start/End: Original strand, 93825 - 93857
Alignment:
| Q |
389 |
atgatgtcatctgcatttgtcataccattacat |
421 |
Q |
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| T |
93825 |
atgatgtcatctgcatttgtcataccattacat |
93857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1869 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1869
Description:
Target: scaffold1869; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 428
Target Start/End: Complemental strand, 1239 - 1197
Alignment:
| Q |
386 |
ttaatgatgtcatctgcatttgtcataccattacatcttatgt |
428 |
Q |
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| T |
1239 |
ttaatgatgtcatctgcatttgtcataccattacatcttatgt |
1197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 15355 - 15441
Alignment:
| Q |
154 |
tgggaaattatttaaagaatctgggtaggacttgacgccaatgtattctctaaaaatgactggattcacatcattgtcaccgatgat |
240 |
Q |
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| T |
15355 |
tgggaaattattaagagaagctgggtatggcttcacgccaatgtattctcgaaaaatgaatggatcaacagcattgtcaccgatgat |
15441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 428
Target Start/End: Original strand, 15656 - 15695
Alignment:
| Q |
389 |
atgatgtcatctgcatttgtcataccattacatcttatgt |
428 |
Q |
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| T |
15656 |
atgatgtcatctacatttgtcataccattacattttatgt |
15695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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