View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6738_low_6 (Length: 428)
Name: NF6738_low_6
Description: NF6738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6738_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 29 - 410
Target Start/End: Original strand, 37443968 - 37444331
Alignment:
| Q |
29 |
aacattgtaactagtggaatactatgaagcaccgtctacgcgagggaatatggaagagcttactaaatgagataagcgctttttagtgttcaaatacaca |
128 |
Q |
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| T |
37443968 |
aacattgtaactagtggaatactatgaagcaccgtctacgcgagggcatatggaagagcttactaaatgagataagcgctttttagtgttcaaatacaca |
37444067 |
T |
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| Q |
129 |
catattgatacattttctacttatttcagtaagctttccaaaaatagcttataattttggttcaaaattggtttcactcactctaccctctcttttgcac |
228 |
Q |
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| T |
37444068 |
catattgata------------------gtaagctttccaaaaatagcttataattttggttcaaaattggtttcactcactctaccctctcttttgcac |
37444149 |
T |
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| Q |
229 |
catcgctcactcaatcctccttttaacaacagttaccctagctaagtcaatgtttttaaacaagtaatttgtcaaaccctcgctgctaatattaaaaatg |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37444150 |
catcgctcactcaatcctccttttaacaacagttaccctagctaagtcaatgtttttaaacaagtaatttgtcaaaccctcactgctaatattaaaaatg |
37444249 |
T |
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| Q |
329 |
ttcctcacactctcagaccaaaatataaagcattaataatttccattgaaaaacaacaaaaaagcacaacaatcttgaagtc |
410 |
Q |
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| T |
37444250 |
ttcctcacactctcagaccaaaatataaagcattaataatttccattgaaaaacaacaaaaaagcacaacaatcttgaagtc |
37444331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 128 - 281
Target Start/End: Complemental strand, 7492676 - 7492522
Alignment:
| Q |
128 |
acatattgatacattttctacttatttcagtaagctttccaaaaa-----tagcttataattttggttcaaaattggtttcactcactctaccctctctt |
222 |
Q |
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||||||||||| ||||||||||| |||| |||||||||||||| |||| |||||||| |||||||||||||||||| || || |||||||| |
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| T |
7492676 |
acatattgataatttttctacttaattcaataagctttccaaaatactactagcctataatttaggttcaaaattggtttcattc----tatcctctctt |
7492581 |
T |
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| Q |
223 |
ttgcaccatcgctcactcaatcctccttttaacaacagttaccctagctaagtcaatgt |
281 |
Q |
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| T |
7492580 |
ttgcaccattgctcactcaatcctccttttaacaacagctatcttagccaagtcaatgt |
7492522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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