View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6738_low_7 (Length: 427)
Name: NF6738_low_7
Description: NF6738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6738_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 111 - 285
Target Start/End: Complemental strand, 11178206 - 11178038
Alignment:
| Q |
111 |
aactatataccaatatgagacaatttatttaataggagtaattaagatacaggttttggttttggttttgggagattgattgtgatagtgatttactgat |
210 |
Q |
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| T |
11178206 |
aactatataccaatatgagacaatttatttaataggagtaattaagatacaggttttggttttgg------gagattgattgtgatagtgatttactgat |
11178113 |
T |
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| Q |
211 |
tgtgattaacacaaaagataaaaagagagaatcaaaagagtatgtgtcagaatcagaaaatttggcctccaacac |
285 |
Q |
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| T |
11178112 |
tgtgattaacacaaaagataaaaagagagaatcaaaagagtatgtgtcagaatcagaaaatttggcctccaacac |
11178038 |
T |
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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 332 - 411
Target Start/End: Complemental strand, 11177991 - 11177912
Alignment:
| Q |
332 |
gtacgataaagcaaaccttacaaacataaatatgatcatcattacattgcatacatataagatgacatgatagtagtaac |
411 |
Q |
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| T |
11177991 |
gtacgataaagcaaaccttacaagcataaatatgatcatcattacattgcatacatataagatgacatgatagtcgtaac |
11177912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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