View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6738_low_8 (Length: 415)
Name: NF6738_low_8
Description: NF6738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6738_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 3537241 - 3537642
Alignment:
| Q |
1 |
ggttgctggagtagcaaaaggtttggatggtgataatgagaaacttgatgaggaagatgaatacataggagttgagtttgctgaggaagattctgaagag |
100 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3537241 |
ggttgctggagtagcagaaggtttggatgatgataatgagcaacttgatgaggaagatgaatacataggagttgagtttgctgaggaagattctgaagag |
3537340 |
T |
|
| Q |
101 |
agagtgaactttgtgcttcagcgaacgttgctagcatccaaagaggaaggccaacgcaaaaatttatttaagactcgttgttccgtcaataacaaagtat |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3537341 |
agagtgaactttgtgcttcagcgattgttgctagcatccaaagaggaaggccaacgcaaaaatttatttaagactcgttgttccgtcaataacaaagtat |
3537440 |
T |
|
| Q |
201 |
gtgacctgataattgataatggaagcacggagaacttggtgtcaaaattattggtggattatttcaagctgcccacggagcctcatgagaagccatactc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3537441 |
gtgacctgataattgataatggaagcacggagaacttggtgtcaaaaaaattggtggattatttcaagctgcccacggagcctcatgagaagccatactc |
3537540 |
T |
|
| Q |
301 |
acttggctgggtcagcaagggatcccaggtacgagtgacgctgtcctgcaaagttcctatatccatcggcaaacattataaagaaaaggtactttgtgat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3537541 |
acttggctgggtcagcaagggatcccaggtacgagtgacgctgtcctgcaaagttcctatatccatcggcaaacattataaagaagaggtactttgtgat |
3537640 |
T |
|
| Q |
401 |
gt |
402 |
Q |
| |
|
|| |
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|
| T |
3537641 |
gt |
3537642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 22925519 - 22925118
Alignment:
| Q |
1 |
ggttgctggagtagcaaaaggtttggatggtgataatgagaaacttgatgaggaagatgaatacataggagttgagtttgctgaggaagattctgaagag |
100 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22925519 |
ggttgctggagtagcagaaggtttagatggtgataatgagaaacttgatgaggaagatgaatacataggagttgagtttgctgaggaagattctgaagag |
22925420 |
T |
|
| Q |
101 |
agagtgaactttgtgcttcagcgaacgttgctagcatccaaagaggaaggccaacgcaaaaatttatttaagactcgttgttccgtcaataacaaagtat |
200 |
Q |
| |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22925419 |
agagtgaactttttgcttcaacgaacgttgctagcatccaaagaggaaggccaacacaaaaatttatttaagactcgttgttccggcaataacaaagtat |
22925320 |
T |
|
| Q |
201 |
gtgacctgataattgataatggaagcacggagaacttggtgtcaaaattattggtggattatttcaagctgcccacggagcctcatgagaagccatactc |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22925319 |
atgacctgataattgataatggaagcacagagaacttggtgtcaaaaaaattggtgaattatttcaagctgcccacggagcctcatgagaagccatactc |
22925220 |
T |
|
| Q |
301 |
acttggctgggtcagcaagggatcccaggtacgagtgacgctgtcctgcaaagttcctatatccatcggcaaacattataaagaaaaggtactttgtgat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
22925219 |
acttggctgggtcagcaagggatcccaggtacgagtgacgcaatcctgcaaagttcctatatccatcggcaaacattatagagaagaggtactttgtgat |
22925120 |
T |
|
| Q |
401 |
gt |
402 |
Q |
| |
|
|| |
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|
| T |
22925119 |
gt |
22925118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 2157191 - 2157538
Alignment:
| Q |
1 |
ggttgctggagtagcaaaaggtttggatggtgataatgagaaacttgatgaggaagatgaatacataggagttgagtttgctgaggaagattctgaagag |
100 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
2157191 |
ggttgctagagtagcagaaggtttggatggtgataatgagcaacttgatgaggaagatgaatacataggagttgagtttgttgaggaagattatgaagag |
2157290 |
T |
|
| Q |
101 |
agagtgaactttgtgcttcagcgaacgttgctagcatccaaagaggaaggccaacgcaaaaatttatttaagactcgttgttccgtcaataacaaagtat |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
2157291 |
agagtgaactttgttcttcagcgaacgttgctagcatccaaagaggaaggccaatgcaaaaatttatttaagattcgttgttccgtcaataacaaagtat |
2157390 |
T |
|
| Q |
201 |
gtgacctgataattgataatggaagcacggagaacttggtgtcaaaattattggtggattatttcaagctgcccacggagcctcatgagaagccatactc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2157391 |
gtgacctgataattgataatggaagcacggagaacttggtgtcaaaaaaattggtggattatttcaagctgcccacggagcctcatgagaagccatactc |
2157490 |
T |
|
| Q |
301 |
acttggctgggtcagcaagggatcccaggtacgagtgacgctgtcctg |
348 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| | ||||||| |
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|
| T |
2157491 |
acttggctgggtcaacaagggatcccaagtacgagtgatgttgtcctg |
2157538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 344 - 402
Target Start/End: Original strand, 2165315 - 2165373
Alignment:
| Q |
344 |
tcctgcaaagttcctatatccatcggcaaacattataaagaaaaggtactttgtgatgt |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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|
| T |
2165315 |
tcctgcaaagttcctatatccatcggcaaacattatagagaagaggtactttgtgatgt |
2165373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 28253018 - 28252934
Alignment:
| Q |
318 |
agggatcccaggtacgagtgacgctgtcctgcaaagttcctatatccatcggcaaacattataaagaaaaggtactttgtgatgt |
402 |
Q |
| |
|
|||||||| || | ||||| || || ||||||| ||||||||| ||||||||||| ||||| |||||| ||||||| |||||||| |
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| T |
28253018 |
agggatcctagattcgagtaacactatcctgcagagttcctatctccatcggcaagcattacaaagaagaggtactctgtgatgt |
28252934 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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