View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6738_low_9 (Length: 407)
Name: NF6738_low_9
Description: NF6738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6738_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 36268678 - 36269067
Alignment:
| Q |
13 |
ggacatcagtgattattgactgctactttcaagcaacctcatacgctacttc-aggcctcgtcattcactccccaacccaaagaaaacatctccgcgact |
111 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36268678 |
ggacatcactgattattgattgctactttcaagcaacctcatacgctacttttaagcctcgtcattcactccccaacccaaagaaaacatttccgcgacc |
36268777 |
T |
|
| Q |
112 |
gttgccaatttgttatcagctaactcaaacaaacttctaaaactatctttcaaagatctaccatccaaccaaggatcattccaaaacagagtagaagact |
211 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |
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| T |
36268778 |
gttgccaatttgttatcagctaactgaaacaaacttctaaaactatctttcaaagatctacgatccaaccaaggatcatttcaaaacaaagtagaagact |
36268877 |
T |
|
| Q |
212 |
catccccaaccttccgacaaatattatcaagcagtcgacctcaatctattagcccaacaccctctctaatattattcacagtctgccaacgcactgaccc |
311 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
36268878 |
catcaccaaccttccgacaaatattatcaagcagtcgacctcaatctactagcgcaacaccctctctaatattattcacagtatgccaacacactgaccc |
36268977 |
T |
|
| Q |
312 |
acctcccctccctacacacaacttcccccctttcctgcatgtaacactcacataacaccttataccataaactcattgtatcctccaaca |
401 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36268978 |
acctcccctccctacacacaactttccccctttcctgcatgtaacactcacataacaccttataccataaactcactgtatcctccaaca |
36269067 |
T |
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