View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6741_high_14 (Length: 235)
Name: NF6741_high_14
Description: NF6741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6741_high_14 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 1021754 - 1021521
Alignment:
| Q |
2 |
ggagtttggtggagaaggaggaggttgaaaattttcccaattccaaacagaagaagtttcagaagctgttgattcattttgatgcgcggttggaatgaac |
101 |
Q |
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| T |
1021754 |
ggagtttggtggagaaggaggaggttgaaaattctcccaattccaaacagaagaagtttcagaagctgttgattcattttgatgcgcggttggaatgaac |
1021655 |
T |
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| Q |
102 |
cagttcggaaactcgcttctcggcgttgaacaaacgcttgaatcggaaagaatgtgaggaagcttcaccggaattttccggcgacgtatttcagaaactg |
201 |
Q |
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| T |
1021654 |
cagttcggaaaatcgcttctcggcgttgaacaaacgcttgaatcggaaagaatgtgaggaagcttcaccggaattttccggcgacgtatttcagaaactg |
1021555 |
T |
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| Q |
202 |
tacggagttttgtgtttgttacggcggaaggagt |
235 |
Q |
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| T |
1021554 |
tacggagttttgtgtttgttacggcggaaggagt |
1021521 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 4971014 - 4970931
Alignment:
| Q |
94 |
gaatgaaccagttcggaaactcgcttctcggcgttgaa---------caaacgcttgaatcggaaagaatgtgaggaagcttca |
168 |
Q |
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| T |
4971014 |
gaatgaaccagttcggaaactcgcttctcggcgttgaacaaatgctacaaatgcttgaattggaaagaatgtgaggaagcttca |
4970931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 6344803 - 6344897
Alignment:
| Q |
74 |
ttcattttgatgcgcggttggaatgaaccagttcggaaactcgcttctcggcgttgaacaaacgcttgaatcggaaagaatgtgaggaagcttca |
168 |
Q |
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| T |
6344803 |
ttcattttgatgcgcggttggaatgaaccagttcggaaactcgcttctcgacattgaacaaatgcttgaatcagaaaaaatgtgaggaagcttca |
6344897 |
T |
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