View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6741_high_6 (Length: 336)
Name: NF6741_high_6
Description: NF6741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6741_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 43712250 - 43711952
Alignment:
| Q |
7 |
tgtatttcatgaatatgattatattatgtacttttgataaatatgcaaatcacgtatgtatgtatgtatgcaaaataatcctctccctccgatacgtaac |
106 |
Q |
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| T |
43712250 |
tgtatttcatgaatatgattatattatgtacttttgataaatatgcaaatcacgtatgtatgtatgtatgcaaaataatcctct-cctcctatacgtaac |
43712152 |
T |
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| Q |
107 |
atcaagtattattcctat-aaaagaaaagaaataatacaacattaaatagaattgagcaaagggtaattatttggggtgaccaagaggacaatcaatctt |
205 |
Q |
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| T |
43712151 |
atcaagtattattcttataaaaagaaaagaaataatacaacattaaatagaattgagcaaa-------------gggtgaccaagaggacaatcaatctt |
43712065 |
T |
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| Q |
206 |
gaatcttgtattggaaatcaaataaggaacagtggctagctagtacattgaggtgtacgtaacaagtagtagattacttactgtatgagaagatagctca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43712064 |
gaatcttgtattggaaatcaaataaggaacagtggctagctagtacattgaggtgtacgtaacaagtagtagtttacttactgtatgagaagatagctca |
43711965 |
T |
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