View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6741_high_8 (Length: 315)

Name: NF6741_high_8
Description: NF6741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6741_high_8
NF6741_high_8
[»] chr5 (20 HSPs)
chr5 (11-224)||(25906252-25906465)
chr5 (11-224)||(25884625-25884839)
chr5 (221-298)||(25906150-25906227)
chr5 (230-288)||(20510498-20510556)
chr5 (237-298)||(22297764-22297825)
chr5 (235-287)||(2846573-2846625)
chr5 (226-298)||(29673282-29673354)
chr5 (236-287)||(2858411-2858462)
chr5 (230-285)||(2344670-2344725)
chr5 (231-289)||(5161103-5161161)
chr5 (234-284)||(33626007-33626057)
chr5 (237-298)||(22297955-22298016)
chr5 (236-288)||(2344507-2344559)
chr5 (238-298)||(29673731-29673791)
chr5 (234-285)||(13657755-13657806)
chr5 (232-285)||(2846957-2847009)
chr5 (232-285)||(2858794-2858846)
chr5 (133-178)||(25924812-25924857)
chr5 (234-298)||(3935964-3936028)
chr5 (234-286)||(24490693-24490744)
[»] chr8 (18 HSPs)
chr8 (231-289)||(33892032-33892090)
chr8 (235-288)||(9861568-9861621)
chr8 (228-283)||(8791915-8791970)
chr8 (229-288)||(15229610-15229669)
chr8 (235-298)||(31212313-31212376)
chr8 (233-298)||(31212477-31212542)
chr8 (228-298)||(10070052-10070122)
chr8 (232-298)||(14148393-14148459)
chr8 (233-298)||(6906262-6906326)
chr8 (230-276)||(39484770-39484816)
chr8 (229-286)||(5879869-5879926)
chr8 (238-287)||(5880067-5880116)
chr8 (237-298)||(6906466-6906527)
chr8 (233-298)||(37037296-37037360)
chr8 (235-286)||(27503426-27503477)
chr8 (233-288)||(33892239-33892294)
chr8 (234-288)||(29242875-29242928)
chr8 (236-285)||(27503696-27503745)
[»] chr7 (22 HSPs)
chr7 (231-289)||(6036544-6036602)
chr7 (236-298)||(9686478-9686540)
chr7 (230-298)||(3555360-3555428)
chr7 (232-288)||(7760800-7760856)
chr7 (235-289)||(29635235-29635289)
chr7 (232-289)||(19105456-19105513)
chr7 (237-298)||(23797237-23797298)
chr7 (235-290)||(37081295-37081349)
chr7 (230-276)||(21657292-21657338)
chr7 (237-298)||(29635696-29635757)
chr7 (238-287)||(31198302-31198350)
chr7 (234-298)||(7760607-7760671)
chr7 (231-290)||(15329853-15329912)
chr7 (231-282)||(35054441-35054492)
chr7 (237-298)||(20165034-20165095)
chr7 (230-298)||(31198490-31198558)
chr7 (235-298)||(12821179-12821242)
chr7 (229-283)||(15330055-15330109)
chr7 (235-273)||(37081156-37081194)
chr7 (233-289)||(23797062-23797116)
chr7 (235-283)||(8129879-8129926)
chr7 (234-298)||(35303853-35303917)
[»] chr2 (18 HSPs)
chr2 (233-298)||(16192606-16192671)
chr2 (235-288)||(25330560-25330613)
chr2 (233-298)||(18509495-18509560)
chr2 (231-298)||(4921356-4921423)
chr2 (230-298)||(32945607-32945675)
chr2 (230-286)||(39786311-39786367)
chr2 (234-288)||(12874679-12874733)
chr2 (237-298)||(12874873-12874934)
chr2 (237-298)||(16127920-16127981)
chr2 (238-287)||(27847860-27847909)
chr2 (238-289)||(981118-981169)
chr2 (234-298)||(37897574-37897638)
chr2 (238-298)||(39786510-39786569)
chr2 (230-288)||(7328500-7328558)
chr2 (235-289)||(20972424-20972478)
chr2 (234-284)||(39159300-39159350)
chr2 (229-286)||(30714117-30714173)
chr2 (258-286)||(18560519-18560547)
[»] chr6 (11 HSPs)
chr6 (230-298)||(34637617-34637685)
chr6 (218-298)||(31298917-31298997)
chr6 (237-288)||(13340445-13340496)
chr6 (235-289)||(34637425-34637479)
chr6 (234-284)||(12289979-12290029)
chr6 (231-286)||(6190565-6190620)
chr6 (229-285)||(12290175-12290230)
chr6 (230-298)||(13340636-13340704)
chr6 (236-298)||(7359612-7359674)
chr6 (236-298)||(24704308-24704370)
chr6 (258-298)||(24704775-24704815)
[»] chr4 (12 HSPs)
chr4 (236-298)||(13552855-13552917)
chr4 (228-287)||(54164459-54164518)
chr4 (235-285)||(28687667-28687716)
chr4 (233-298)||(33752726-33752791)
chr4 (233-286)||(54164671-54164724)
chr4 (259-298)||(17431153-17431192)
chr4 (226-287)||(16854831-16854892)
chr4 (234-298)||(34665171-34665235)
chr4 (237-288)||(32185283-32185334)
chr4 (260-298)||(33752327-33752365)
chr4 (234-283)||(7513526-7513575)
chr4 (237-286)||(53343707-53343756)
[»] chr3 (16 HSPs)
chr3 (233-298)||(30172069-30172134)
chr3 (234-286)||(32618991-32619043)
chr3 (231-283)||(4475311-4475363)
chr3 (233-288)||(6931143-6931198)
chr3 (230-298)||(4304138-4304206)
chr3 (234-298)||(4304340-4304404)
chr3 (238-298)||(4475108-4475168)
chr3 (236-296)||(30173647-30173707)
chr3 (237-288)||(2928096-2928147)
chr3 (234-284)||(19279899-19279949)
chr3 (229-286)||(27614008-27614065)
chr3 (256-288)||(34502623-34502655)
chr3 (236-298)||(30430271-30430333)
chr3 (233-298)||(43907912-43907976)
chr3 (229-298)||(45405093-45405162)
chr3 (238-286)||(30430672-30430720)
[»] chr1 (19 HSPs)
chr1 (235-298)||(30748951-30749014)
chr1 (232-283)||(30749148-30749199)
chr1 (235-298)||(30770402-30770465)
chr1 (232-283)||(30770599-30770650)
chr1 (233-298)||(22679335-22679400)
chr1 (234-275)||(51941889-51941930)
chr1 (227-298)||(15393347-15393418)
chr1 (233-298)||(16706528-16706596)
chr1 (237-287)||(23528252-23528302)
chr1 (233-298)||(14760066-14760131)
chr1 (226-298)||(20171380-20171451)
chr1 (235-298)||(15393145-15393208)
chr1 (240-298)||(13765561-13765619)
chr1 (232-298)||(22679519-22679585)
chr1 (234-283)||(32800332-32800381)
chr1 (235-287)||(23485670-23485722)
chr1 (232-288)||(30746964-30747019)
chr1 (232-288)||(30768415-30768470)
chr1 (237-285)||(51900116-51900164)
[»] scaffold0009 (1 HSPs)
scaffold0009 (221-298)||(26987-27064)
[»] scaffold0025 (1 HSPs)
scaffold0025 (234-288)||(63826-63879)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 25906465 - 25906252
Alignment:
Q  11 gagattggacggttcaaatttcaatgacgattttgannnnnnnaaatctaaaatatcaagtttgaaatgtagacaactcaatctagattgaatggttcag 110  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25906465 gagattggacggttcaaatttcaatgacgattttgatttttttaaatctaaaatatcaagtttgaaatgtagacagctcaatctagattgaatggttcag 25906366  T
Q  111 atgttgctagctagacacaatcatgtagttgtggctgtgcatgaccaagatccttaaaacatgtataaacttcatagattctggaaagtcttaaccatta 210  Q
    ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25906365 atgttgctaactagacacagtcatgtagttgtggctgcgcatgaccaagatccttaaaacatgtataaacttcatagattccggaaagtcttaaccatta 25906266  T
Q  211 aatgagagaatatt 224  Q
    ||||||||||||||    
T  25906265 aatgagagaatatt 25906252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 25884839 - 25884625
Alignment:
Q  11 gagattggacggttcaaatttcaatgacgattttgannnnnnnaaa-tctaaaatatcaagtttgaaatgtagacaactcaatctagattgaatggttca 109  Q
    |||||||||||||||| |||||||||||||||||||       ||| | ||||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  25884839 gagattggacggttcagatttcaatgacgattttgattttttaaaaatgtaaaatatcaagtttgaaatgtagaccgctcaatcttgattgaatggttca 25884740  T
Q  110 gatgttgctagctagacacaatcatgtagttgtggctgtgcatgaccaagatccttaaaacatgtataaacttcatagattctggaaagtcttaaccatt 209  Q
      | |||||| ||  || || | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||    
T  25884739 cgtcttgctaactgcacgcagttatgtagttgtggctgcgcatgaccaagatccttaaaacatgtataaacttcatagattctgaaaagtcttaattatt 25884640  T
Q  210 aaatgagagaatatt 224  Q
    |||||||||||||||    
T  25884639 aaatgagagaatatt 25884625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 25906227 - 25906150
Alignment:
Q  221 tattgtttattttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  25906227 tattgtttattttagggttaaataagtaaataatcctcctaaatatatcaacatttgattttagtcccccttaaatat 25906150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 20510556 - 20510498
Alignment:
Q  230 ttttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    ||||||||||||| ||||||||||| ||| ||||||||| |||||||||||||||||||    
T  20510556 ttttagggttaaaaaagtaaatagtcctcataaatatataaacatttgattttagtccc 20510498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 22297764 - 22297825
Alignment:
Q  237 gttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||||||| || ||||||    
T  22297764 gttaaataagtaaatagtccctctaaatatatcaacatttgattttagtccctctaaaatat 22297825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 2846573 - 2846625
Alignment:
Q  235 gggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcc 287  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||||||    
T  2846573 gggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtcc 2846625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 29673282 - 29673354
Alignment:
Q  226 tttattttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||| |||||||||||||||||| || | | |||||||| ||||||||||||||||||| ||| ||||||    
T  29673282 tttatttaagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcctcctaaaatat 29673354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 2858411 - 2858462
Alignment:
Q  236 ggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcc 287  Q
    |||||||||||||||| || | ||||||||||||||||||||||||||||||    
T  2858411 ggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtcc 2858462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 2344725 - 2344670
Alignment:
Q  230 ttttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagt 285  Q
    |||| |||||||||||||||||||| |||||||||| | |||||||| ||||||||    
T  2344725 tttttgggttaaataagtaaatagtcctcctaaatagaccaacattttattttagt 2344670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 5161161 - 5161103
Alignment:
Q  231 tttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccc 289  Q
    |||||||||||||||||||||  || || ||||||||| |||||||||||||| |||||    
T  5161161 tttagggttaaataagtaaatgattttcttaaatatattaacatttgattttactcccc 5161103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 33626057 - 33626007
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgattttag 284  Q
    ||||||||||||||||||  | |||||||||||||||| ||||||||||||    
T  33626057 agggttaaataagtaaatgatcctcctaaatatatcaatatttgattttag 33626007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 22298016 - 22297955
Alignment:
Q  237 gttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||| || | ||||||||||  |||||||||||||||||||| | ||||||    
T  22298016 gttaaataagtaaatggtccccctaaatatactaacatttgattttagtccccttaaaatat 22297955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 2344507 - 2344559
Alignment:
Q  236 ggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    ||||||||||||||| ||| | ||| ||||||||| |||||||||||||||||    
T  2344507 ggttaaataagtaaacagtcccccttaatatatcatcatttgattttagtccc 2344559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 298
Target Start/End: Complemental strand, 29673791 - 29673731
Alignment:
Q  238 ttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||| |||| ||||||||||  |||||||||||||||| || || ||||||    
T  29673791 ttaaataagtaaatggttcccctaaatatacaaacatttgattttagttcctctaaaatat 29673731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 13657806 - 13657755
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgattttagt 285  Q
    ||||||||||||||||||||| |||  |||||||  ||||||||||||||||    
T  13657806 agggttaaataagtaaatagtcctctgaaatatactaacatttgattttagt 13657755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 2847009 - 2846957
Alignment:
Q  232 ttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagt 285  Q
    |||||||||||||||||||| | ||||||| ||| | |||||||||||||||||    
T  2847009 ttagggttaaataagtaaat-ggtctcctatataaaccaacatttgattttagt 2846957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 2858846 - 2858794
Alignment:
Q  232 ttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagt 285  Q
    |||||||||||||||||||| | ||||||| ||| | |||||||||||||||||    
T  2858846 ttagggttaaataagtaaat-ggtctcctatataaaccaacatttgattttagt 2858794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 25924857 - 25924812
Alignment:
Q  133 atgtagttgtggctgtgcatgaccaagatccttaaaacatgtataa 178  Q
    |||||||||  |||| ||| ||||||||||||||||||||||||||    
T  25924857 atgtagttgcagctgcgcacgaccaagatccttaaaacatgtataa 25924812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 3935964 - 3936028
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||||||| ||||  ||||||||| ||| ||||||||| | |||| || ||||||    
T  3935964 agggttaaataagtaaatggttcatctaaatataacaatatttgatttcaatccctctaaaatat 3936028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 24490693 - 24490744
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtc 286  Q
    |||||||||||||||||| || || |||| |||| ||||||||||||||||||    
T  24490693 agggttaaataagtaaatggtccttctaa-tataccaacatttgattttagtc 24490744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 33892032 - 33892090
Alignment:
Q  231 tttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccc 289  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  33892032 tttagggttaaataagtaaatagttctcttaaatataccaacatttgattttagtcccc 33892090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 9861568 - 9861621
Alignment:
Q  235 gggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9861568 gggttaaataagtaaatagtcctcctaaatatatcaacatttgattttagtccc 9861621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 8791970 - 8791915
Alignment:
Q  228 tattttagggttaaataagtaaatagttctcctaaatatatcaacatttgatttta 283  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  8791970 tattttagggttaaataagtaaatagttctcttaaatatactaacatttgatttta 8791915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 15229610 - 15229669
Alignment:
Q  229 attttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    |||||||||||||||||||||||||||| | |||||||| |||||||| |||||||||||    
T  15229610 attttagggttaaataagtaaatagttcccttaaatataccaacattttattttagtccc 15229669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 31212313 - 31212376
Alignment:
Q  235 gggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||||||||| | | |||||||||||||||||||||||||||||| | ||||||    
T  31212313 gggttaaataagtaaatagtccccttaaatatatcaacatttgattttagtccccataaaatat 31212376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 31212542 - 31212477
Alignment:
Q  233 tagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||||||||   |||||||||| ||||||||||||||||||||| | ||||||    
T  31212542 tagggttaaataagtaaatagtctccctaaatataccaacatttgattttagtccccataaaatat 31212477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 10070122 - 10070052
Alignment:
Q  228 tattttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||||| ||||||||| |||||||||| ||| |||| |||||| ||| ||| ||||||    
T  10070122 tattttagggttaaataagcaaatagttcccctaaatataccaatattttattttaatcctcctaaaatat 10070052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 298
Target Start/End: Original strand, 14148393 - 14148459
Alignment:
Q  232 ttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||| ||||||||| | || | |||||||||||||||||||||||||||||| ||| ||||||    
T  14148393 ttagggtttaataagtaagtggtccccctaaatatatcaacatttgattttagtcctcctaaaatat 14148459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 6906262 - 6906326
Alignment:
Q  233 tagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||||||||||| | |||||||||| |||||||||| |||||||||| | ||||||    
T  6906262 tagggttaaataagtaaatagtccccctaaatataccaacatttga-tttagtccccataaaatat 6906326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 39484816 - 39484770
Alignment:
Q  230 ttttagggttaaataagtaaatagttctcctaaatatatcaacattt 276  Q
    ||||| |||||||||||||||| |||| |||||||||||||||||||    
T  39484816 ttttaaggttaaataagtaaatggttcccctaaatatatcaacattt 39484770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 5879869 - 5879926
Alignment:
Q  229 attttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtc 286  Q
    ||||||||||||||||||||||||||   ||||||||||  || ||||||||||||||    
T  5879869 attttagggttaaataagtaaatagtctccctaaatatactaatatttgattttagtc 5879926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 5880116 - 5880067
Alignment:
Q  238 ttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcc 287  Q
    |||||||||||||| ||||||||||||| | |||||||||||||| ||||    
T  5880116 ttaaataagtaaattgttctcctaaataaaccaacatttgatttttgtcc 5880067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 6906527 - 6906466
Alignment:
Q  237 gttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||  || | |||||||||| ||||||||||||||||||||| | ||||||    
T  6906527 gttaaataagtaaacggtccccctaaatataccaacatttgattttagtccccataaaatat 6906466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 37037360 - 37037296
Alignment:
Q  233 tagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||||| || || ||||||||  |||||||||||||||||||| || ||||||    
T  37037360 tagggttaaataagtaaatggt-cttctaaatattccaacatttgattttagtccctctaaaatat 37037296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 27503426 - 27503477
Alignment:
Q  235 gggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtc 286  Q
    ||||||||||||||| |  | |||||||||||||||||||||| ||||||||    
T  27503426 gggttaaataagtaagtgatcctcctaaatatatcaacatttgcttttagtc 27503477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 33892294 - 33892239
Alignment:
Q  233 tagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    |||||||||||||||||| | |  || |||||||| ||||||||||||||||||||    
T  33892294 tagggttaaataagtaaacaatcttcttaaatataccaacatttgattttagtccc 33892239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 29242928 - 29242875
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    |||||||||||||||||| || | ||||||  |||||||||||||||||||||||    
T  29242928 agggttaaataagtaaattgtcc-cctaaaattatcaacatttgattttagtccc 29242875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 27503745 - 27503696
Alignment:
Q  236 ggttaaataagtaaatagttctcctaaatatatcaacatttgattttagt 285  Q
    ||||||||||||||||  ||| | |||||||||||| |||||||||||||    
T  27503745 ggttaaataagtaaatgattcacttaaatatatcaatatttgattttagt 27503696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 6036544 - 6036602
Alignment:
Q  231 tttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccc 289  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6036544 tttagagttaaataagtaaatagttcccctaaatatatcaacatttgattttagtcccc 6036602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 9686540 - 9686478
Alignment:
Q  236 ggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| | ||||||    
T  9686540 ggttaaataagtaaatagtcctcctaaatatatcaatatttgattttagtccccataaaatat 9686478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 3555360 - 3555428
Alignment:
Q  230 ttttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||| |||| || | |||||||||| ||||||||||||||||||||||| ||||||    
T  3555360 ttttagggttaaataagcaaatggtccccctaaatataccaacatttgattttagtccccctaaaatat 3555428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 7760856 - 7760800
Alignment:
Q  232 ttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  7760856 ttaggattaaataagtaaatagttcccctaaatataccaacatttgattttagtccc 7760800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 29635235 - 29635289
Alignment:
Q  235 gggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccc 289  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||||||||    
T  29635235 gggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtcccc 29635289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 19105513 - 19105456
Alignment:
Q  232 ttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccc 289  Q
    ||||||||||||||||||||||| | |||||||||| |||| ||||||||||||||||    
T  19105513 ttagggttaaataagtaaatagtccccctaaatataccaacttttgattttagtcccc 19105456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 23797298 - 23797237
Alignment:
Q  237 gttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||| ||||||||||  ||||||||||||||||||||||||||||||| || ||||||    
T  23797298 gttaaatatgtaaatagtttccctaaatatatcaacatttgattttagtccctctaaaatat 23797237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 37081349 - 37081295
Alignment:
Q  235 gggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccccc 290  Q
    |||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  37081349 gggttaaataagtaaata-ttcccctaaatatatcaacgtttgattttagtccccc 37081295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 21657292 - 21657338
Alignment:
Q  230 ttttagggttaaataagtaaatagttctcctaaatatatcaacattt 276  Q
    |||||||||||||||||||||| || |||||||||||||||||||||    
T  21657292 ttttagggttaaataagtaaatggtcctcctaaatatatcaacattt 21657338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 29635757 - 29635696
Alignment:
Q  237 gttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||| |||||| ||| ||||||||||||||||||||||||||||| | ||| ||||||    
T  29635757 gttaaatatgtaaatggttgtcctaaatatatcaacatttgattttagttctcctaaaatat 29635696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 31198302 - 31198350
Alignment:
Q  238 ttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcc 287  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  31198302 ttaaataagtaaatagttc-cctaaatataccaacatttgattttagtcc 31198350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 7760607 - 7760671
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||||| | || ||||||||| || ||| |||||||||||||||| ||||||    
T  7760607 agggttaaataagtaaataatccttctaaatataccagcatatgattttagtccccctaaaatat 7760671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 15329853 - 15329912
Alignment:
Q  231 tttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccccc 290  Q
    |||||||||||||| | ||||||| | | |||||||| ||||||||||||||||||||||    
T  15329853 tttagggttaaatatggaaatagtccccttaaatataccaacatttgattttagtccccc 15329912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 35054441 - 35054492
Alignment:
Q  231 tttagggttaaataagtaaatagttctcctaaatatatcaacatttgatttt 282  Q
    ||||||||||||||||||||||||||| |||||||||  ||||||| |||||    
T  35054441 tttagggttaaataagtaaatagttcttctaaatatactaacatttaatttt 35054492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 20165095 - 20165034
Alignment:
Q  237 gttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||| |||| ||  ||||||||||| |||||||||||||||||||| || ||||||    
T  20165095 gttaaataaggaaatggtcttcctaaatataccaacatttgattttagtccctctaaaatat 20165034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 31198558 - 31198490
Alignment:
Q  230 ttttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||| |||||||||||||||||||| |   |||||||| ||||||||||||||||| | ||| ||||||    
T  31198558 tttttgggttaaataagtaaatagtccctttaaatataccaacatttgattttagttctcctaaaatat 31198490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 12821179 - 12821242
Alignment:
Q  235 gggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||| || | | |||||||| |||| |||||||||| ||||||| ||||||    
T  12821179 gggttaaataagtaaatggtccccttaaatataccaacgtttgattttaatccccctaaaatat 12821242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 15330109 - 15330055
Alignment:
Q  229 attttagggttaaataagtaaatagttctcctaaatatatcaacatttgatttta 283  Q
    ||||| |||||||||||||| || || |||||||||||||| |||||| ||||||    
T  15330109 atttttgggttaaataagtatatggtcctcctaaatatatccacatttaatttta 15330055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 37081156 - 37081194
Alignment:
Q  235 gggttaaataagtaaatagttctcctaaatatatcaaca 273  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  37081156 gggttaaataagtaaatagtttccctaaatatatcaaca 37081194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 23797062 - 23797116
Alignment:
Q  233 tagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccc 289  Q
    ||||||||||||||||||| ||||  ||||||| || || |||||||||||||||||    
T  23797062 tagggttaaataagtaaatggttc--ctaaatacataaaaatttgattttagtcccc 23797116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 8129879 - 8129926
Alignment:
Q  235 gggttaaataagtaaatagttctcctaaatatatcaacatttgatttta 283  Q
    ||||||||||||||||| | |||||||||| || |||||||||||||||    
T  8129879 gggttaaataagtaaat-gatctcctaaatctaccaacatttgatttta 8129926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 35303853 - 35303917
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||| || || || | || ||||||||||| |||| |||||||| ||||||||||||    
T  35303853 agggttaaataattacatggtcccccgaaatatatcaatatttaattttagttccccttaaatat 35303917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 16192671 - 16192606
Alignment:
Q  233 tagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||    
T  16192671 tagggttaaataagtaaatagtcctcttaaatatatcaacatttgattttagtctccctaaaatat 16192606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 25330560 - 25330613
Alignment:
Q  235 gggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    |||||||||||||||||||| | |||||||| ||||||||||||||||||||||    
T  25330560 gggttaaataagtaaatagtccccctaaatacatcaacatttgattttagtccc 25330613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 18509495 - 18509560
Alignment:
Q  233 tagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||| ||||| || | |||||||||| |||||||||||||||||||| || ||||||    
T  18509495 tagggttaaataattaaatggtccccctaaatataccaacatttgattttagtccctctaaaatat 18509560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 4921423 - 4921356
Alignment:
Q  231 tttagggttaaataagtaaatagttctc-ctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||| | ||||||    
T  4921423 tttagggttaaataaataaatagt-ctctctaaatatatcaacatttgattttaatccccttaaaatat 4921356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 32945607 - 32945675
Alignment:
Q  230 ttttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||| |||||||||| ||||||||| | || ||||||| ||||||||||||||||||||| | ||||||    
T  32945607 tttttgggttaaataggtaaatagtcccccaaaatataccaacatttgattttagtccccataaaatat 32945675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 39786311 - 39786367
Alignment:
Q  230 ttttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtc 286  Q
    ||||||||||||||||||||||| | ||  |||||||| ||||||||||||||||||    
T  39786311 ttttagggttaaataagtaaataatcctattaaatataccaacatttgattttagtc 39786367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 12874679 - 12874733
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    |||||||||||||||||| |||  |||||||||| |||||||||||||| |||||    
T  12874679 agggttaaataagtaaatggtttccctaaatataccaacatttgattttggtccc 12874733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 12874934 - 12874873
Alignment:
Q  237 gttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||||  ||| ||||||| ||| |||||||||||||||| || ||||||    
T  12874934 gttaaataagtaaatagtcttcccaaatataccaatatttgattttagtccctctaaaatat 12874873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 16127920 - 16127981
Alignment:
Q  237 gttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||||||| | | |||||||| |||||||| |||||||||| ||| ||||||    
T  16127920 gttaaataagtaaatagtccccttaaatataccaacatttaattttagtcctcctaaaatat 16127981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 27847860 - 27847909
Alignment:
Q  238 ttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcc 287  Q
    ||||||||||||||||| | | |||||||| |||||||||||||||||||    
T  27847860 ttaaataagtaaatagtccccataaatataccaacatttgattttagtcc 27847909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 981169 - 981118
Alignment:
Q  238 ttaaataagtaaatagttctc-ctaaatatatcaacatttgattttagtcccc 289  Q
    ||||||||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  981169 ttaaataagtaaatagt-ctctctaaatataccaacatttgattttagtcccc 981118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 37897574 - 37897638
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||| ||||||  |||||||||| | ||||||||||||||| |||| || ||||||    
T  37897574 agggttaaataaggaaatagccctcctaaatagaccaacatttgattttactccctctaaaatat 37897638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 298
Target Start/End: Complemental strand, 39786569 - 39786510
Alignment:
Q  238 ttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||| ||| |||||||| || ||||| |||||||||||||| ||||||    
T  39786569 ttaaataagtaaatagt-ctcataaatataccagcatttaattttagtccccctaaaatat 39786510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 7328558 - 7328500
Alignment:
Q  230 ttttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    |||| ||||||||||||||||||||   ||||||||||  ||||||||| |||||||||    
T  7328558 tttttgggttaaataagtaaatagtctccctaaatatactaacatttgactttagtccc 7328500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 20972478 - 20972424
Alignment:
Q  235 gggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccc 289  Q
    ||||||||||||| ||| || |   ||||||||||||||||||||||||||||||    
T  20972478 gggttaaataagtgaatggtccctttaaatatatcaacatttgattttagtcccc 20972424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 39159350 - 39159300
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgattttag 284  Q
    |||||||||||||| |||||| ||| ||||||||  |||||||||||||||    
T  39159350 agggttaaataagttaatagtcctcttaaatatactaacatttgattttag 39159300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 30714117 - 30714173
Alignment:
Q  229 attttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtc 286  Q
    |||| ||||||||||| |||||| || | | |||||||||||||||||||||||||||    
T  30714117 atttgagggttaaata-gtaaatggtccccttaaatatatcaacatttgattttagtc 30714173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Original strand, 18560519 - 18560547
Alignment:
Q  258 cctaaatatatcaacatttgattttagtc 286  Q
    |||||||||||||||||||||||||||||    
T  18560519 cctaaatatatcaacatttgattttagtc 18560547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 34637685 - 34637617
Alignment:
Q  230 ttttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||||| ||||| ||||||    
T  34637685 ttttagggttaaataagtaaatagtcaccctaaatatatcaacatttgattttagttcccctaaaatat 34637617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 31298997 - 31298917
Alignment:
Q  218 gaatattgtttattttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||| |||| |||||||||||||||||||||| |   |||||||| ||| ||||||||||||| || || ||||||    
T  31298997 gaatattgtatattatagggttaaataagtaaatagtccctttaaatataccaatatttgattttagttcctctaaaatat 31298917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 13340445 - 13340496
Alignment:
Q  237 gttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    |||||||||||||||||| | | |||||||| ||||||||||||||||||||    
T  13340445 gttaaataagtaaatagtccccttaaatataccaacatttgattttagtccc 13340496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 34637425 - 34637479
Alignment:
Q  235 gggttaaataagtaaatagttctcc-taaatatatcaacatttgattttagtcccc 289  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||    
T  34637425 gggttaaataagtaaatag-tctccataaatataccaacatttgattttagtcccc 34637479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 12289979 - 12290029
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgattttag 284  Q
    |||||||||||||||||||||   |||||||||| ||||||||||||||||    
T  12289979 agggttaaataagtaaatagtctccctaaatataccaacatttgattttag 12290029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 6190565 - 6190620
Alignment:
Q  231 tttagggttaaataagtaaatagttctcc-taaatatatcaacatttgattttagtc 286  Q
    ||||||||||| ||||||||| | ||||| |||||||||||||||||||||||||||    
T  6190565 tttagggttaactaagtaaat-gatctccctaaatatatcaacatttgattttagtc 6190620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 12290230 - 12290175
Alignment:
Q  229 attttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagt 285  Q
    ||||||||||||||||||||||| | || |||||||||| |||||||| ||||||||    
T  12290230 attttagggttaaataagtaaat-gatcccctaaatataccaacatttaattttagt 12290175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 13340704 - 13340636
Alignment:
Q  230 ttttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||| | ||||||| | | ||||||||  |||||||||||||||||||| | ||||||    
T  13340704 ttttagggttaaatatgaaaatagtccccttaaatatactaacatttgattttagtccccataaaatat 13340636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 7359674 - 7359612
Alignment:
Q  236 ggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||| | ||   |||||||||| ||||||||||||||| ||||||| ||||||    
T  7359674 ggttaaataagtaactcgtcgccctaaatataccaacatttgattttactccccctaaaatat 7359612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 24704308 - 24704370
Alignment:
Q  236 ggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||| ||||||||||| ||||  ||||||||| ||| |||||||||||||| |||| ||||||    
T  24704308 ggttgaataagtaaatggttcctctaaatataccaatatttgattttagtctccctaaaatat 24704370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 24704815 - 24704775
Alignment:
Q  258 cctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||| ||||||||||||| ||||| ||||||    
T  24704815 cctaaatatatcaatatttgattttagttcccctaaaatat 24704775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 13552917 - 13552855
Alignment:
Q  236 ggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| | ||||||    
T  13552917 ggttaaataagtaaatagtcctcctaaatatatcaatatttgattttagtccccataaaatat 13552855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 54164459 - 54164518
Alignment:
Q  228 tattttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcc 287  Q
    ||||| |||||||||||||||||||||  | ||||||||| |||||||||||||||||||    
T  54164459 tatttaagggttaaataagtaaatagtcgttctaaatataccaacatttgattttagtcc 54164518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 28687716 - 28687667
Alignment:
Q  235 gggttaaataagtaaatagttctcctaaatatatcaacatttgattttagt 285  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  28687716 gggttaaataagtaaatagttctt-taaatatatcaacatttgattttagt 28687667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 33752791 - 33752726
Alignment:
Q  233 tagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||||  || ||  ||||||||||||||||||||||||||| |||| ||||||    
T  33752791 tagggttaaataagtaaacggtccttttaaatatatcaacatttgattttagtctccctaaaatat 33752726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 54164724 - 54164671
Alignment:
Q  233 tagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtc 286  Q
    ||||||||||||||||||||||   |||||||||| ||||||||||||||||||    
T  54164724 tagggttaaataagtaaatagtctccctaaatataccaacatttgattttagtc 54164671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 17431192 - 17431153
Alignment:
Q  259 ctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  17431192 ctaaatatatcaacatttgattttagtccccctaaaatat 17431153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 16854892 - 16854831
Alignment:
Q  226 tttattttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcc 287  Q
    |||||| || |||||||||||||||||||  ||||||||| |||||||||  ||||||||||    
T  16854892 tttattctatggttaaataagtaaatagtcgtcctaaatagatcaacattaaattttagtcc 16854831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 34665235 - 34665171
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||||||| ||  |  |||||||| |||||||||||||||||| |||| ||||||    
T  34665235 agggttaaataagtaaatggtaatattaaatataccaacatttgattttagtcaccctaaaatat 34665171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 32185283 - 32185334
Alignment:
Q  237 gttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    ||||||| |||||||||| |  ||||||||| ||||||||||||||||||||    
T  32185283 gttaaatgagtaaatagtccctctaaatataccaacatttgattttagtccc 32185334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 298
Target Start/End: Original strand, 33752327 - 33752365
Alignment:
Q  260 taaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  33752327 taaatatatcaatatttgattttagtccccctaaaatat 33752365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 7513526 - 7513575
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgatttta 283  Q
    |||||||||||||||||||| ||  ||||||||| |||||||| ||||||    
T  7513526 agggttaaataagtaaatagctcctctaaatataccaacatttaatttta 7513575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 53343707 - 53343756
Alignment:
Q  237 gttaaataagtaaatagttctcctaaatatatcaacatttgattttagtc 286  Q
    ||||||||||||||| || ||| |||||||| |||| |||||||||||||    
T  53343707 gttaaataagtaaatggtcctcttaaatataccaacgtttgattttagtc 53343756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 30172069 - 30172134
Alignment:
Q  233 tagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||||| || | |||||||||||||||||||||||||||||||| | ||||||    
T  30172069 tagggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtccccttaaaatat 30172134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 32619043 - 32618991
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtc 286  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  32619043 agggttaaataagtaaatagttcatctaaatatatcaacatttgattttagtc 32618991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 4475363 - 4475311
Alignment:
Q  231 tttagggttaaataagtaaatagttctcctaaatatatcaacatttgatttta 283  Q
    ||||||||||||| || ||||||| ||||||||||||||||||||||||||||    
T  4475363 tttagggttaaattagaaaatagtgctcctaaatatatcaacatttgatttta 4475311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 6931198 - 6931143
Alignment:
Q  233 tagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    |||||||||||||||||||||| ||| ||||||||  |||||||||||||||||||    
T  6931198 tagggttaaataagtaaatagtcctcttaaatatactaacatttgattttagtccc 6931143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 4304138 - 4304206
Alignment:
Q  230 ttttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||||| ||||| || | | |||||||| ||||||||||||||||||| ||| ||||||    
T  4304138 ttttagggttaaataaataaatcgtccccttaaatataccaacatttgattttagtcctcctaaaatat 4304206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 4304404 - 4304340
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||||| |   |||||||||| |||||||||||||||||||| || ||||||    
T  4304404 agggttaaataagtaaataatctccctaaatataccaacatttgattttagtccctctaaaatat 4304340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 4475108 - 4475168
Alignment:
Q  238 ttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||||| | ||||| ||||||    
T  4475108 ttaaataagtaaaaagtcctcctaaatataccaacatttgattttaattcccctaaaatat 4475168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 30173707 - 30173647
Alignment:
Q  236 ggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaat 296  Q
    ||||||||||| ||||||||  |||||||||| ||| ||||||||||||||||||| ||||    
T  30173707 ggttaaataagaaaatagtttccctaaatataccaatatttgattttagtccccctaaaat 30173647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 2928096 - 2928147
Alignment:
Q  237 gttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    ||||||||||||||| || |||||||||||| |||||||||||| |||||||    
T  2928096 gttaaataagtaaatggtcctcctaaatataccaacatttgattctagtccc 2928147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 19279899 - 19279949
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgattttag 284  Q
    |||||||||||||||| |||||| ||||| |||| ||||||||||||||||    
T  19279899 agggttaaataagtaagtagttcccctaagtataccaacatttgattttag 19279949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 27614008 - 27614065
Alignment:
Q  229 attttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtc 286  Q
    ||||| |||||||  ||||||||||||| |||||||||| |||||||| |||||||||    
T  27614008 atttttgggttaatcaagtaaatagttcccctaaatataccaacatttaattttagtc 27614065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 34502623 - 34502655
Alignment:
Q  256 ctcctaaatatatcaacatttgattttagtccc 288  Q
    |||||||||||||||||||||||||||||||||    
T  34502623 ctcctaaatatatcaacatttgattttagtccc 34502655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 30430271 - 30430333
Alignment:
Q  236 ggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||||| || |  ||||||||| ||||||||||||||||| || || ||||||    
T  30430271 ggttaaataagtaaatggtccctctaaatataccaacatttgattttagttcctctaaaatat 30430333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 43907976 - 43907912
Alignment:
Q  233 tagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||||| | || | ||||||||  || ||||||||||||||||||| ||||||    
T  43907976 tagggttaaataagtaaat-gatcccttaaatatactaatatttgattttagtccccctaaaatat 43907912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 45405162 - 45405093
Alignment:
Q  229 attttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||| |||||||||||| ||  || | | ||||||||  |||||||||||||||||||||| ||||||    
T  45405162 attttatggttaaataagttaactgtccccttaaatatactaacatttgattttagtccccctaaaatat 45405093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 30430720 - 30430672
Alignment:
Q  238 ttaaataagtaaatagttctcctaaatatatcaacatttgattttagtc 286  Q
    |||||||||||||| || | |||||||||||||| |||| |||||||||    
T  30430720 ttaaataagtaaatggtccccctaaatatatcaatatttaattttagtc 30430672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 30748951 - 30749014
Alignment:
Q  235 gggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||| || ||||||||||||  || ||||||||||||||||||| ||||||    
T  30748951 gggttaaataagtaaatggtcctcctaaatatacaaatatttgattttagtccccctaaaatat 30749014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 30749199 - 30749148
Alignment:
Q  232 ttagggttaaataagtaaatagttctcctaaatatatcaacatttgatttta 283  Q
    ||||||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  30749199 ttagggttaaatacgtaaataatcctcctaaatatatcaacatttgatttta 30749148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 30770402 - 30770465
Alignment:
Q  235 gggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||||||| || ||||||||||||  || ||||||||||||||||||| ||||||    
T  30770402 gggttaaataagtaaatggtcctcctaaatatacaaatatttgattttagtccccctaaaatat 30770465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 30770650 - 30770599
Alignment:
Q  232 ttagggttaaataagtaaatagttctcctaaatatatcaacatttgatttta 283  Q
    ||||||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  30770650 ttagggttaaatacgtaaataatcctcctaaatatatcaacatttgatttta 30770599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 22679335 - 22679400
Alignment:
Q  233 tagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||||||||||| |  || ||||||||||||| |||||||| ||||||| ||||||    
T  22679335 tagggttaaataagtaaatagtccctctgaatatatcaacatatgattttaatccccctaaaatat 22679400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 51941889 - 51941930
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatt 275  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  51941889 agggttaaataagtaaatagttcccctaaatatatcaacatt 51941930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 15393418 - 15393347
Alignment:
Q  227 ttattttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||| || |||||||||||||| || | || ||||||| ||||||||||||| ||||||||| ||||||    
T  15393418 ttatttttggattaaataagtaaatggtcccccgaaatataccaacatttgatttcagtccccctaaaatat 15393347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 16706596 - 16706528
Alignment:
Q  233 tagggttaaataagtaaatagttctcctaaatatatca---acatttgattttagtcccccttaaatat 298  Q
    |||||||||||| ||||||||| | |||||||||| ||   ||||||||||||||||||||| ||||||    
T  16706596 tagggttaaatatgtaaatagtccccctaaatataccaccaacatttgattttagtccccctaaaatat 16706528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 23528302 - 23528252
Alignment:
Q  237 gttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcc 287  Q
    ||||||||||||||||||  | |||||||||||||||||| ||||||||||    
T  23528302 gttaaataagtaaatagtctttctaaatatatcaacatttaattttagtcc 23528252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 14760131 - 14760066
Alignment:
Q  233 tagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||||||||  | | | |||||||| ||||||||||||||| ||||||| ||||||    
T  14760131 tagggttaaataagtaaatgatccccttaaatataccaacatttgattttaatccccctaaaatat 14760066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 20171380 - 20171451
Alignment:
Q  226 tttattttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||| || ||| ||||||||||| || ||||| |||||| |||||||||||||||||||| || ||||||    
T  20171380 tttatttaagagttgaataagtaaatggt-ctccttaatataccaacatttgattttagtccctctaaaatat 20171451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 15393145 - 15393208
Alignment:
Q  235 gggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||||||||||||||||||| |||  ||||||| ||| |||| ||||| |||||||| ||||||    
T  15393145 gggttaaataagtaaatagtcctcacaaatataccaatatttaattttcgtccccctaaaatat 15393208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 13765561 - 13765619
Alignment:
Q  240 aaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    ||||||||||||| |   |||||||||| ||||||||||||||||||||| | ||||||    
T  13765561 aaataagtaaataatctccctaaatataccaacatttgattttagtccccataaaatat 13765619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 22679585 - 22679519
Alignment:
Q  232 ttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||| ||||||||||||||   | | |||||||||| |||||||||||||||||||| || ||||||    
T  22679585 ttagagttaaataagtaaacgatccccctaaatataccaacatttgattttagtccctctaaaatat 22679519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 32800381 - 32800332
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgatttta 283  Q
    ||||| ||||||||||||||| |  ||||||||||||| |||||||||||    
T  32800381 agggtcaaataagtaaatagtcccactaaatatatcaatatttgatttta 32800332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 23485670 - 23485722
Alignment:
Q  235 gggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcc 287  Q
    ||||| ||||||||||||||   ||||||||||| || |||||||||||||||    
T  23485670 gggttgaataagtaaatagtctccctaaatatattaatatttgattttagtcc 23485722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 30747019 - 30746964
Alignment:
Q  232 ttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    ||||||||||||||||||||| |  || |||||||| |||||||| |||||||||||    
T  30747019 ttagggttaaataagtaaataatcatc-taaatataccaacatttcattttagtccc 30746964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 30768470 - 30768415
Alignment:
Q  232 ttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    ||||||||||||||||||||| |  || |||||||| |||||||| |||||||||||    
T  30768470 ttagggttaaataagtaaataatcatc-taaatataccaacatttcattttagtccc 30768415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 51900116 - 51900164
Alignment:
Q  237 gttaaataagtaaatagttctcctaaatatatcaacatttgattttagt 285  Q
    ||||||||||||||| || || ||||||||  |||||||||||||||||    
T  51900116 gttaaataagtaaatggtccttctaaatattccaacatttgattttagt 51900164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 26987 - 27064
Alignment:
Q  221 tattgtttattttagggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtcccccttaaatat 298  Q
    |||| ||||||||| | |||||||| ||||| |||| ||||||||||||||| ||| |||||||||| ||| ||||||    
T  26987 tattatttattttaagcttaaataactaaatggttcccctaaatatatcaacgtttaattttagtcctcctaaaatat 27064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 63826 - 63879
Alignment:
Q  234 agggttaaataagtaaatagttctcctaaatatatcaacatttgattttagtccc 288  Q
    ||||||||||||| ||||| | || ||||||||| ||||||||||||||||||||    
T  63826 agggttaaataagaaaatactacttctaaatata-caacatttgattttagtccc 63879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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