View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6741_high_9 (Length: 269)
Name: NF6741_high_9
Description: NF6741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6741_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 9127061 - 9126965
Alignment:
| Q |
14 |
ttggagttaccagagcatggaattgtttcttataaagtgatcaaacaaannnnnnnnattataagcaaaagagaaaatgtatggctagaatccaatg |
110 |
Q |
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| T |
9127061 |
ttggagttatcagagcatggaattgtttcttataaagtgatcaaacaaattttttttattataagcaaaagagaaaatgtatggctagaatccaatg |
9126965 |
T |
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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 9129876 - 9129816
Alignment:
| Q |
194 |
ttgatgagaatcaagcttttcatgtgagatcattagaaaacacaagtgatcaagtgagtaa |
254 |
Q |
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| T |
9129876 |
ttgatgagaatcaagcttttcatgtgagatcattagaaaacacaagtgatcaagtgagtaa |
9129816 |
T |
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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 9126879 - 9126822
Alignment:
| Q |
197 |
atgagaatcaagcttttcatgtgagatcattagaaaacacaagtgatcaagtgagtaa |
254 |
Q |
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| T |
9126879 |
atgagaatcaagcttttcatgtgagatcattagaaaacacaagtgatcaagtgagtaa |
9126822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 9130056 - 9129960
Alignment:
| Q |
14 |
ttggagttaccagagcatggaattgtttcttataaagtgatcaaacaaannnnnnnnattataagcaaaagagaaaatgtatggctagaatccaatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||| |
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| T |
9130056 |
ttggagttaccagagcatggaattgtttcttataaaatgatcaaacattttttttttattataagcaaaagagaaaatgtatagctcgaatccaatg |
9129960 |
T |
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