View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6741_low_1 (Length: 517)
Name: NF6741_low_1
Description: NF6741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6741_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 14 - 499
Target Start/End: Original strand, 3563529 - 3564012
Alignment:
| Q |
14 |
acatcacatcgaccatactgtataatatattattaataaggttattgaaagtggccacgtttttattgtgccatctctcttatagtagtactattgatta |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
3563529 |
acatcacatcgaccatactgtataatatattattaataaggttattgaaagtggccacgtttttattgtgccatctctcttctagt---actattgatta |
3563625 |
T |
|
| Q |
114 |
tagtaggctagtagtaatagctcaggccaaaataagaaggacaatgattagcattttctagctagcaactacctagtagcaatagcattcctcttaattg |
213 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3563626 |
tagtaggctagtagcaatagctcaggccaaaataagaaggacaatgattagcattttctagctagcaaatacctagtagcaatagcattcctcttaattg |
3563725 |
T |
|
| Q |
214 |
attattctttc-nnnnnnnaataattacatactagtataacttttgtacgtgctttattactatgtttaaatgtattnnnnnnnnnnnnnnttatgtata |
312 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |
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| T |
3563726 |
attattctttctattttttaataattacatactagtataacttttgtacgagctttattactatgtttaaatatattaaaaaaataaaaaattatgtata |
3563825 |
T |
|
| Q |
313 |
agtctttctttttgttacaatatgtatatgtctatgtatgtatatagtatagctgaatttcttcgtgcctttgtgttgcttactacgaataataatcata |
412 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3563826 |
agtctttatttttgttacaatatgtatatgtctatgtatgtatatagtatagctgaatttcttcgtgcctttgtgttgcttactacgaataataataata |
3563925 |
T |
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| Q |
413 |
tatacattgaaagtttattaattttccatcctttatctacgtcacattaatgtcttaacaaattttgttgaaacaaacgacataaat |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3563926 |
tatacattgaaagtttattaattttccatcctttatctacttcacattaatgtcttaacaaattttgttgaaacaaacgacataaat |
3564012 |
T |
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