View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6741_low_12 (Length: 250)
Name: NF6741_low_12
Description: NF6741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6741_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 43756867 - 43757104
Alignment:
| Q |
7 |
gagttggacacctgacatttttatgattcatacctctataacattcttatcacattttgaatcagnnnnnnnnntcaaaagatcatgtaggattattttt |
106 |
Q |
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| T |
43756867 |
gagttggacacctgacatttttatgattcatacctctataacattcttatcacattttgaatcggaaaaaaaaatcaaaagatcatgtaggattattttt |
43756966 |
T |
|
| Q |
107 |
agcattgtttgacatgattggtctatttttattttcctttacaggttaaattttgctctgcagaaactctgaagaaggaatattttacagctgagacttt |
206 |
Q |
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| T |
43756967 |
agcattgtttgacatgattggtctatttttattttcctttacaggttaaattttgctctgcagaaactctgaagaaagaatattttacagatgagacttt |
43757066 |
T |
|
| Q |
207 |
gccaccaaacttcagagattgaaagttatttttggaag |
244 |
Q |
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| T |
43757067 |
gccaccaaacttcagagattgaaagttatttttggaag |
43757104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 43762590 - 43762729
Alignment:
| Q |
101 |
atttttagcattgtttgacatgattggtctatttttattttcctttacaggttaaattttgctctgcagaaactctgaagaaggaatattttacagctga |
200 |
Q |
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| T |
43762590 |
attttcagcactgtttgacatggctgctccattttcattttcttttacaggtaagattctgctctgcagagactgtgaggaaggaatattttacaagtga |
43762689 |
T |
|
| Q |
201 |
gactttgccaccaaacttcagagattgaaagttatttttg |
240 |
Q |
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| T |
43762690 |
aactttgccacctaacttcagagattgaaagttatttttg |
43762729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 13333947 - 13334175
Alignment:
| Q |
7 |
gagttggacacctgacatttttatgattcatacctctataacattcttatcacattttgaatcagnnnnnnnnntcaaaagatcatgtaggattattttt |
106 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||||||||| ||||||||||||||| |
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| T |
13333947 |
gagttggacacctgacatttttatctttcatacctctataacattctcttcacatttttaatc--gaaaaaaaatcaaaagatcctgtaggattattttt |
13334044 |
T |
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| Q |
107 |
agcattgtttgacatgattggtctatttttattttcctttacaggttaaattttgctctgcagaaactctgaagaaggaatattttacagctgagacttt |
206 |
Q |
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|| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| ||||| |
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| T |
13334045 |
agtcttgtttgacatgattggtccattttctttttcctttacaggttaaattttgctctgcagaaactctcaaaaaggaatattttacagatgaaacttt |
13334144 |
T |
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| Q |
207 |
gccaccaaacttcagagattgaaagttattt |
237 |
Q |
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| T |
13334145 |
ggcaccaaactttaatgattgaaagttattt |
13334175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 13334377 - 13334173
Alignment:
| Q |
7 |
gagttggacacctgacatttttatgattcatacctctataacattcttatcacattttgaatcagnnnnnnnnntcaaaagatcatgtaggattattttt |
106 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |||||||| || || ||||||||| |||| | ||||||||| ||||||||||| ||| |
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| T |
13334377 |
gagttggatacctgacatttttatgattcatacatctataacgttgttttcacatttttaatcggaaaaaa----caaaagatcgtgtaggattatgttt |
13334282 |
T |
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| Q |
107 |
agcattgtttgacatgattggtctatttttattttcctttacaggttaaattttgctctgcagaaactctgaagaaggaatattttacagctgagacttt |
206 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| ||||| |
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| T |
13334281 |
agcattgtttgacatgattggtctattttcattttcctttacaggttaaatttttctctgcagaaactctcaagaaggaatattttacagatgaaacttt |
13334182 |
T |
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| Q |
207 |
gccaccaaa |
215 |
Q |
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|||| |||| |
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| T |
13334181 |
gccatcaaa |
13334173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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