View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6741_low_17 (Length: 228)
Name: NF6741_low_17
Description: NF6741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6741_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 48569090 - 48569018
Alignment:
| Q |
143 |
ccacaatgaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48569090 |
ccacaatgaatgttcaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt |
48569018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 48569212 - 48569141
Alignment:
| Q |
13 |
tccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
84 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48569212 |
tccaaccaaaaaggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
48569141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 10822202 - 10822265
Alignment:
| Q |
150 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg |
213 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
10822202 |
gaatgttcaccttacgcatagtttcctctgattcatatactttttctggaaaatgccacacagg |
10822265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 36145194 - 36145131
Alignment:
| Q |
150 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg |
213 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
36145194 |
gaatgttcaccttacgcatggtatcctctgattcatatactttttctggaaaatgccacacagg |
36145131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 10821876 - 10821937
Alignment:
| Q |
17 |
acaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaa |
78 |
Q |
| |
|
|||||||| ||||| || |||||||||| |||||||||||| ||||| || ||||||||||| |
|
|
| T |
10821876 |
acaaaatatgtattcgaaagatctcctaagactgatttcaaggcagattctgcacactgcaa |
10821937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 36145510 - 36145449
Alignment:
| Q |
17 |
acaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaa |
78 |
Q |
| |
|
|||||||| ||||| || |||||||| | |||||||||||| ||||| || ||||||||||| |
|
|
| T |
36145510 |
acaaaatatgtatttgaaagatctcccaagactgatttcaaggcagattctgcacactgcaa |
36145449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University